Evidence map›Paper›PMID 34381037›Full record

ArticleNature communications2021

Structure, mechanism and crystallographic fragment screening of the SARS-CoV-2 NSP13 helicase.

Joseph A Newman, Alice Douangamath, Setayesh Yadzani, Yuliana Yosaatmadja, Antony Aimon, José Brandão-Neto, Louise Dunnett, Tyler Gorrie-Stone, Rachael Skyner, Daren Fearon and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review

88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Joseph A NewmanCentre for Medicines Discovery, University of Oxford, Oxford, UK. Joseph.Newman@cmd.ox.ac.uk.ORCID 0000-0003-4488-0516
Alice DouangamathDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, UK.ORCID 0000-0002-9196-8644
Setayesh YadzaniStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-9205-4318
Yuliana YosaatmadjaCentre for Medicines Discovery, University of Oxford, Oxford, UK.ORCID 0000-0003-2875-5993
Antony AimonDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, UK.ORCID 0000-0002-9135-129X
José Brandão-NetoDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, UK.
Louise DunnettDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, UK.
Tyler Gorrie-StoneDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, UK.
Rachael SkynerDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, UK.ORCID 0000-0003-3614-6661
Daren FearonDiamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, UK.ORCID 0000-0003-3529-7863
Matthieu SchapiraStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-1047-3309
Frank von DelftCentre for Medicines Discovery, University of Oxford, Oxford, UK.
Opher GileadiCentre for Medicines Discovery, University of Oxford, Oxford, UK.

Funding

Cancer Research UK 24759Wellcome TrustWellcome Trust 106169/ZZ14/Z
6 · The paper itself

Abstract

There is currently a lack of effective drugs to treat people infected with SARS-CoV-2, the cause of the global COVID-19 pandemic. The SARS-CoV-2 Non-structural protein 13 (NSP13) has been identified as a target for anti-virals due to its high sequence conservation and essential role in viral replication. Structural analysis reveals two "druggable" pockets on NSP13 that are among the most conserved sites in the entire SARS-CoV-2 proteome. Here we present crystal structures of SARS-CoV-2 NSP13 solved in the APO form and in the presence of both phosphate and a non-hydrolysable ATP analog. Comparisons of these structures reveal details of conformational changes that provide insights into the helicase mechanism and possible modes of inhibition. To identify starting points for drug development we have performed a crystallographic fragment screen against NSP13. The screen reveals 65 fragment hits across 52 datasets opening the way to structure guided development of novel antiviral agents.

Indexed as

Adenosine TriphosphateAmino Acid SequenceApoenzymesBinding SitesCrystallography, X-RayDrug DesignEnzyme InhibitorsMethyltransferasesModels, MolecularPhosphatesProtein ConformationRNA HelicasesRNA, ViralSARS-CoV-2Structure-Activity RelationshipViral Nonstructural ProteinsAdenosine TriphosphateApoenzymesEnzyme InhibitorsMethyltransferasesNsp13 protein, SARS-CoVPhosphatesRNA HelicasesRNA, ViralViral Nonstructural Proteins

Identifiers

PMID34381037
PMCPMC8358061

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.