Evidence map›Paper›PMID 34379307›Full record

ArticleVirus genes2021

The Citrus yellow mosaic badnavirus ORFI functions as a RNA-silencing suppressor.

Tharanath Vadlamudi, Athanasios Kaldis, Venkataramana Sai Gopal Divi, Basavaprabhu L Patil, Andreas E Voloudakis

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Emerging and Re-Emerging Diseases Caused by Badnaviruses.Pathogens (Basel, Switzerland) · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Tharanath VadlamudiLaboratory of Plant Breeding and Biometry, Faculty of Crop Science, Agricultural University of Athens, 11855, Athens, Greece.
Athanasios KaldisLaboratory of Plant Breeding and Biometry, Faculty of Crop Science, Agricultural University of Athens, 11855, Athens, Greece.
Venkataramana Sai Gopal DiviDepartment of Virology, Sri Venkateswara University, Tirupati, Andhra Pradesh, 517502, India.
Basavaprabhu L PatilICAR-Indian Institute of Horticultural Research, Bengaluru, Karnataka, 560089, India.
Andreas E VoloudakisLaboratory of Plant Breeding and Biometry, Faculty of Crop Science, Agricultural University of Athens, 11855, Athens, Greece. avoloud@aua.gr.ORCID http://orcid.org/0000-0002-0369-4904
Agricultural University of Athens · GRIndian Institute of Horticultural Research · INSri Venkateswara University · IN

Funding

Education, Audiovisual and Culture Executive Agency 2013-2536
6 · The paper itself

Abstract

Citrus yellow mosaic badnavirus (CMBV) causes mosaic disease in all economically important citrus cultivars of India, with losses reaching up to 70%. CMBV belongs to the genus Badnavirus, family Caulimoviridae, possessing a circular double-stranded (ds) DNA genome with six open reading frames (ORFs I to VI), whose functions are yet to be deciphered. The RNA-silencing suppressor (RSS) activity has not been assigned to any CMBV ORF as yet. In the present study, it was found that ORFI exhibited RSS activity among all the six CMBV ORFs tested. Studies were done by employing the well-established Agrobacterium-mediated transient assay based on the transgenic Nicotiana benthamiana 16c plant line expressing the green fluorescent protein (GFP). The RSS activity of ORFI was confirmed by the analysis of the GFP visual expression in the agroinfiltrated leaves, further supported by quantification of GFP expression by RT-PCR. Based on the GFP visual expression, the CMBV ORFI was a weak RSS when compared to the p19 protein of tomato bushy stunt virus. In contrast, the ORFII, ORFIV, ORFV, ORFVI, and CP gene did not exhibit any RSS activity. Hence, ORFI is the first ORF of CMBV to be identified with RNA-silencing suppression activity.

Indexed as

BadnavirusCitrusGreen Fluorescent ProteinsIndiaNicotianaOpen Reading FramesPlant DiseasesPlants, Genetically ModifiedPlant VirusesRNARNA InterferenceTombusvirusGreen Fluorescent ProteinsRNABadnavirusCMBVNicotiana benthamiana line 16cRNAiRNA-silencing suppressor

Identifiers

PMID34379307
OpenAlexW3188104891

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.