Evidence map›Paper›PMID 34378979›Full record

ArticlemSphere2021

Quantifying the Impact of Human Leukocyte Antigen on the Human Gut Microbiota.

Stijn P Andeweg, Can Keşmir, Bas E Dutilh

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  10. RETRACTED: Effect ofMicroorganisms · 2024
    Article
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  13. Review
  14. Bacterial community modifies host genetics effect on early childhood caries.medRxiv : the preprint server for health sciences · 2023
    Article
  15. Review
  16. Host gene effects on gut microbiota in type 1 diabetes.Biochemical Society transactions · 2022
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Stijn P AndewegTheoretical Biology and Bioinformatics, Science for Life, Utrecht Universitygrid.5477.1, Utrecht, the Netherlands.
Can KeşmirTheoretical Biology and Bioinformatics, Science for Life, Utrecht Universitygrid.5477.1, Utrecht, the Netherlands.
Bas E DutilhTheoretical Biology and Bioinformatics, Science for Life, Utrecht Universitygrid.5477.1, Utrecht, the Netherlands.
Utrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The composition of the gut microbiota is affected by a number of factors, including the innate and adaptive immune system. The major histocompatibility complex (MHC), or the human leukocyte antigen (HLA) in humans, performs an essential role in vertebrate immunity and is very polymorphic in different populations. HLA determines the specificity of T lymphocyte and natural killer (NK) cell responses, including those against the commensal bacteria present in the human gut. Thus, it is likely that our HLA molecules, and thereby the adaptive immune response, can shape the composition of our microbiota. Here, we investigated the effect of HLA haplotype on the microbiota composition. We performed HLA typing and microbiota composition analyses on 3,002 public human gut microbiome data sets. We found that individuals with functionally similar HLA molecules are also similar in their microbiota composition. Our results show a statistical association between host HLA haplotype and gut microbiota composition. Because the HLA haplotype is a readily measurable parameter of the human immune system, these results open the door to incorporating the genetics of the immune system into predictive microbiome models.

Indexed as

Adaptive ImmunityDatabases, GeneticDatasets as TopicGastrointestinal MicrobiomeGene Expression ProfilingHaplotypesHistocompatibility TestingHLA AntigensHumansSymbiosisT-LymphocytesTranscriptomeHLA Antigensgut microbiomehuman leukocyte antigenimmune-microbiome interactionsquantitative biology

Identifiers

PMID34378979
PMCPMC8386457
OpenAlexW3189510090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.