Evidence map›Paper›PMID 34378958›Full record

ArticleMicrobiology spectrum2021

An NAD-Specific 6-Hydroxy-3-Succinoyl-Semialdehyde-Pyridine Dehydrogenase from Nicotine-Degrading Agrobacterium tumefaciens Strain S33.

Jinmeng Shang, Xia Wang, Meng Zhang, Lexin Li, Rufei Wang, Haiyan Huang, Shuning Wang

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jinmeng ShangState Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong Universitygrid.27255.37, Qingdao, People's Republic of China.
Xia WangState Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong Universitygrid.27255.37, Qingdao, People's Republic of China.
Meng ZhangState Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong Universitygrid.27255.37, Qingdao, People's Republic of China.
Lexin LiState Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong Universitygrid.27255.37, Qingdao, People's Republic of China.
Rufei WangState Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong Universitygrid.27255.37, Qingdao, People's Republic of China.
Haiyan HuangSchool of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciencegrid.410587.f, Jinan, People's Republic of China.
Shuning WangState Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong Universitygrid.27255.37, Qingdao, People's Republic of China.ORCID 0000-0002-1166-078X
Shandong University · CNShandong First Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium tumefaciens strain S33 can catabolize nicotine via a hybrid of the pyridine and pyrrolidine pathways. Most of the enzymes involved in this biochemical pathway have been identified and characterized, except for the one catalyzing the oxidation of 6-hydroxy-3-succinoyl-semialdehyde-pyridine to 6-hydroxy-3-succinoylpyridine. Based on a previous genomic and transcriptomic analysis, an open reading frame (ORF) annotated to encode aldehyde dehydrogenase (Ald) in the nicotine-degrading cluster was predicted to be responsible for this step. In this study, we heterologously expressed the enzyme and identified its function by biochemical assay and mass spectrum analysis. It was found that Ald catalyzes the NAD-specific dehydrogenation of 6-hydroxy-3-succinoyl-semialdehyde-pyridine to 6-hydroxy-3-succinoylpyridine. With the nonhydroxylated analog 3-succinoyl-semialdehyde-pyridine (SAP) as a substrate, Ald had a specific activity of 10.05 U/mg at pH 9.0 and apparent

Indexed as

Agrobacterium tumefaciensBacterial ProteinsBiodegradation, EnvironmentalKineticsNADNicotineOxidoreductasesPyridinesSubstrate SpecificitySuccinates6-hydroxy-3-succinoyl-pyridineBacterial ProteinsNADNicotineOxidoreductasesPyridinesSuccinatesAgrobacterium tumefaciensaldehyde dehydrogenasebio-based furan compoundsbiotransformationfurfuralnicotine degradation

Identifiers

PMID34378958
PMCPMC8552603
OpenAlexW3190655461

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.