Evidence map›Paper›PMID 34376693›Full record

ArticleNature communications2021

Small tandem DNA duplications result from CST-guided Pol α-primase action at DNA break termini.

Joost Schimmel, Núria Muñoz-Subirana, Hanneke Kool, Robin van Schendel, Marcel Tijsterman

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

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  16. CST/Polα/primase-mediated fill-in synthesis at DSBs.Cell cycle (Georgetown, Tex.) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Joost SchimmelDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Núria Muñoz-SubiranaDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Hanneke KoolDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Robin van SchendelDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0001-7068-0679
Marcel TijstermanDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands. m.tijsterman@lumc.nl.ORCID 0000-0001-8465-9002
Leiden University Medical Center · NLLeiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small tandem duplications of DNA occur frequently in the human genome and are implicated in the aetiology of certain human cancers. Recent studies have suggested that DNA double-strand breaks are causal to this mutational class, but the underlying mechanism remains elusive. Here, we identify a crucial role for DNA polymerase α (Pol α)-primase in tandem duplication formation at breaks having complementary 3' ssDNA protrusions. By including so-called primase deserts in CRISPR/Cas9-induced DNA break configurations, we reveal that fill-in synthesis preferentially starts at the 3' tip, and find this activity to be dependent on 53BP1, and the CTC1-STN1-TEN1 (CST) and Shieldin complexes. This axis generates near-blunt ends specifically at DNA breaks with 3' overhangs, which are subsequently repaired by non-homologous end-joining. Our study provides a mechanistic explanation for a mutational signature abundantly observed in the genomes of species and cancer cells.

Indexed as

DNA Breaks, Double-StrandedAnimalsBase SequenceCell Cycle ProteinsCell LineCells, CulturedDNA-Binding ProteinsDNA End-Joining RepairDNA Polymerase IDNA PrimaseDNA, Single-StrandedHumansMiceMicrosatellite RepeatsMultiprotein ComplexesMutationCell Cycle ProteinsCtc1 protein, humanDNA-Binding ProteinsDNA polymerase alpha-primaseDNA Polymerase IDNA PrimaseDNA, Single-StrandedMultiprotein ComplexesSHLD1 protein, humanStn1 protein, humanTelomere-Binding ProteinsTen1 protein, humanTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1

Identifiers

PMID34376693
PMCPMC8355091
OpenAlexW3192785301

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.