Evidence map›Paper›PMID 34376661›Full record

ArticleNature communications2021

Predictive biomarkers for 5-fluorouracil and oxaliplatin-based chemotherapy in gastric cancers via profiling of patient-derived xenografts.

Deukchae Na, Jeesoo Chae, Sung-Yup Cho, Wonyoung Kang, Ahra Lee, Seoyeon Min, Jinjoo Kang, Min Jung Kim, Jaeyong Choi, Woochan Lee and 14 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
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  15. Genes · 2023
    Article
  16. Article
  17. TIMP-2 as a predictive biomarker in 5-Fu-resistant colorectal cancer.Journal of cancer research and clinical oncology · 2023
    Article
  18. Sinapic acid alleviates 5-fluorouracil-induced nephrotoxicity in rats via Nrf2/HO-1 signalling.Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Deukchae Na *Ewha Institute of Convergence Medicine, Ewha Womans University Mokdong Hospital, Seoul, Korea.
Jeesoo Chae *Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Korea.ORCID 0000-0002-6869-2213
Sung-Yup Cho *Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Korea.
Wonyoung KangThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.
Ahra LeeDepartment of Life Science, Ewha Womans University, Seoul, Korea.
Seoyeon MinDepartment of Life Science, Ewha Womans University, Seoul, Korea.
Jinjoo KangDepartment of Life Science, Ewha Womans University, Seoul, Korea.
Min Jung KimMedical Research Center, Genomic Medicine Institute (GMI), Seoul National University, Seoul, Korea.
Jaeyong ChoiDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Korea.
Woochan LeeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Korea.ORCID 0000-0002-1092-7331
Dongjin ShinDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Korea.
Ahrum MinCancer Research Institute, Seoul National University, Seoul, Korea.
Yu-Jin KimCancer Research Institute, Seoul National University, Seoul, Korea.
Kyung-Hun LeeCancer Research Institute, Seoul National University, Seoul, Korea.
Tae-Yong KimCancer Research Institute, Seoul National University, Seoul, Korea.
Yun-Suhk SuhDepartment of Surgery, Seoul National University College of Medicine, Seoul, Korea.
Seong-Ho KongDepartment of Surgery, Seoul National University College of Medicine, Seoul, Korea.
Hyuk-Joon LeeCancer Research Institute, Seoul National University, Seoul, Korea.
Woo-Ho KimCancer Research Institute, Seoul National University, Seoul, Korea.ORCID 0000-0003-0557-1016
Hansoo ParkDepartment of Biomedical Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Korea.ORCID 0000-0003-1027-8850
Seock-Ah ImCancer Research Institute, Seoul National University, Seoul, Korea. moisa@snu.ac.kr.
Han-Kwang YangCancer Research Institute, Seoul National University, Seoul, Korea. hkyang@snu.ac.kr.
Charles LeeThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA. Charles.Lee@jax.org.
Jong-Il KimDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Korea. jongil@snu.ac.kr.ORCID 0000-0002-7240-3744

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
NCI NIH HHS P30 CA034196
6 · The paper itself

Abstract

Gastric cancer (GC) is commonly treated by chemotherapy using 5-fluorouracil (5-FU) derivatives and platinum combination, but predictive biomarker remains lacking. We develop patient-derived xenografts (PDXs) from 31 GC patients and treat with a combination of 5-FU and oxaliplatin, to determine biomarkers associated with responsiveness. When the PDXs are defined as either responders or non-responders according to tumor volume change after treatment, the responsiveness of PDXs is significantly consistent with the respective clinical outcomes of the patients. An integrative genomic and transcriptomic analysis of PDXs reveals that pathways associated with cell-to-cell and cell-to-extracellular matrix interactions enriched among the non-responders in both cancer cells and the tumor microenvironment (TME). We develop a 30-gene prediction model to determine the responsiveness to 5-FU and oxaliplatin-based chemotherapy and confirm the significant poor survival outcomes among cases classified as non-responder-like in three independent GC cohorts. Our study may inform clinical decision-making when designing treatment strategies.

Indexed as

AdenocarcinomaAnimalsAntineoplastic Combined Chemotherapy ProtocolsBiomarkers, TumorFemaleFluorouracilGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMiceMice, Inbred NODMice, KnockoutMice, SCIDOxaliplatinStomach NeoplasmsSurvival AnalysisBiomarkers, TumorFluorouracilOxaliplatin

Identifiers

PMID34376661
PMCPMC8355375

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.