Evidence map›Paper›PMID 34375584›Full record

ArticleMolecular cell2021

A composite DNA element that functions as a maintainer required for epigenetic inheritance of heterochromatin.

Xiaoyi Wang, Joao A Paulo, Xue Li, Haining Zhou, Juntao Yu, Steven P Gygi, Danesh Moazed

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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  10. Minimal requirements for the epigenetic inheritance of engineered silent chromatin domains.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
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  13. Review
  14. The Fission Yeast Mating-Type Switching Motto: "One-for-Two" and "Two-for-One".Microbiology and molecular biology reviews : MMBR · 2023
    Review
  15. Mechanisms of chromatin-based epigenetic inheritance.Science China. Life sciences · 2022
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Xiaoyi WangHoward Hughes Medical Institute, Department of Cell Biology, Harvard Medical School, Boston, MA, USA.
Joao A PauloDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Xue LiBioinformatics and Integrative Biology Program, University of Massachusetts Medical School, Worcester, MA, USA.
Haining ZhouHoward Hughes Medical Institute, Department of Cell Biology, Harvard Medical School, Boston, MA, USA.
Juntao YuHoward Hughes Medical Institute, Department of Cell Biology, Harvard Medical School, Boston, MA, USA.
Steven P GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Danesh MoazedHoward Hughes Medical Institute, Department of Cell Biology, Harvard Medical School, Boston, MA, USA. Electronic address: danesh@hms.harvard.edu.
Howard Hughes Medical Institute · USHarvard University · USUniversity of Massachusetts Chan Medical School · US

Funding

New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
RNAi-mediated Targeting of Hetorochromatin AssemblyR01GM072805 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MOAZED, DANESH · 2005 to 2025
$6.9M
Advancing Multiplexed Isobaric Tag-based Strategies for Proteome ProfilingR01GM132129 · NIGMS · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2019 to 2023
$1.7M
NIGMS NIH HHS R01 GM067945NIGMS NIH HHS R01 GM072805NIGMS NIH HHS R01 GM132129
6 · The paper itself

Abstract

Epigenetic inheritance of heterochromatin requires DNA-sequence-independent propagation mechanisms, coupling to RNAi, or input from DNA sequence, but how DNA contributes to inheritance is not understood. Here, we identify a DNA element (termed "maintainer") that is sufficient for epigenetic inheritance of pre-existing histone H3 lysine 9 methylation (H3K9me) and heterochromatin in Schizosaccharomyces pombe but cannot establish de novo gene silencing in wild-type cells. This maintainer is a composite DNA element with binding sites for the Atf1/Pcr1 and Deb1 transcription factors and the origin recognition complex (ORC), located within a 130-bp region, and can be converted to a silencer in cells with lower rates of H3K9me turnover, suggesting that it participates in recruiting the H3K9 methyltransferase Clr4/Suv39h. These results suggest that, in the absence of RNAi, histone H3K9me is only heritable when it can collaborate with maintainer-associated DNA-binding proteins that help recruit the enzyme responsible for its epigenetic deposition.

Indexed as

Chromatin Assembly and DisassemblyDNA MethylationHeredityRegulatory Sequences, Nucleic AcidActivating Transcription FactorsAdenosine TriphosphatasesBinding SitesCell Cycle ProteinsDNA, FungalEpigenesis, GeneticGene Expression Regulation, FungalHeterochromatinHistone-Lysine N-MethyltransferaseHistonesOrigin Recognition ComplexProteinsActivating Transcription FactorsAdenosine Triphosphatasesalcohol O-acetyltransferaseCell Cycle Proteinsclr4 protein, S pombeDNA, FungalHeterochromatinHistone-Lysine N-MethyltransferaseHistonesOrigin Recognition ComplexPcr1 protein, S pombeProteinsRdp1 protein, S pombeSchizosaccharomyces pombe ProteinsAtf1Clr4Deb1epigenetic inheritanceH3K9meheterochromatinmaintainerORCPcr1Suv39h

Identifiers

PMID34375584
PMCPMC8500937
OpenAlexW3192055102

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.