Evidence map›Paper›PMID 34375541›Full record

ArticleScience progress

Genome-wide identification of simple sequence repeats and development of polymorphic SSR markers in swamp eel (Monopterus albus).

Hai-Feng Tian, Qiao-Mu Hu, Zhong Li

Open access · diamondAbstract read
In one paragraph

Article in Science progress. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genome-Wide Microsatellites inAnimals : an open access journal from MDPI · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. The First Genome Survey and De Novo Assembly of the Short Mackerel (Animals : an open access journal from MDPI · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hai-Feng TianYangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan, Hubei, China.ORCID 0000-0002-8264-5579
Qiao-Mu HuYangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan, Hubei, China.
Zhong LiYangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan, Hubei, China.
Chinese Academy of Fishery Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesSwamp eel is one model species for sexual reversion and an aquaculture fish in China. One local strain with deep yellow and big spots of

methodsThe genome wide SSRs were mined by using MISA software, and their types and genomic distribution patterns were investigated. Based on the available flanking sequences, primer pairs were batched developed, and Polymorphic SSRs were identified by using Polymorphic SSR Retrieval tool. The obtained polymorphic SSRs were validated by using e-PCR and capillary electrophoresis, then they were used to investigate genetic diversity of one breeding population.

resultsA total of 364,802 SSRs were identified in assembled

conclusionsThe genome-wide SSRs and newly developed SSR markers will provide a useful tool for genetic mapping, diversity analysis studies in swamp eel in the future. The high level of genetic diversity (Na = 5.29, PIC = 0.5068,

Indexed as

SmegmamorphaAnimalsChromosome MappingGenomeMicrosatellite RepeatsPolymerase Chain Reactiongenetic diversityMonopterus albuspolymorphic SSRssimple sequence repeatsswamp eel

Identifiers

PMID34375541
PMCPMC10358632
OpenAlexW3191910819

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.