Evidence map›Paper›PMID 34375298›Full record

ArticleJournal of medical Internet research2021

Information Retrieval in an Infodemic: The Case of COVID-19 Publications.

Douglas Teodoro, Sohrab Ferdowsi, Nikolay Borissov, Elham Kashani, David Vicente Alvarez, Jenny Copara, Racha Gouareb, Nona Naderi, Poorya Amini

Open access · goldAbstract read
In one paragraph

Article in Journal of medical Internet research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Douglas Teodoro *Geneva School of Business Administration, HES-SO University of Applied Arts and Sciences of Western Switzerland, Carouge, Switzerland.ORCID 0000-0001-6238-4503
Sohrab Ferdowsi *Geneva School of Business Administration, HES-SO University of Applied Arts and Sciences of Western Switzerland, Carouge, Switzerland.ORCID 0000-0003-3768-6408
Nikolay BorissovRisklick AG, Bern, Switzerland.ORCID 0000-0002-8423-9873
Elham KashaniInstitute of Pathology, University of Bern, Bern, Switzerland.ORCID 0000-0002-4221-4926
David Vicente AlvarezGeneva School of Business Administration, HES-SO University of Applied Arts and Sciences of Western Switzerland, Carouge, Switzerland.ORCID 0000-0002-6319-3765
Jenny CoparaGeneva School of Business Administration, HES-SO University of Applied Arts and Sciences of Western Switzerland, Carouge, Switzerland.ORCID 0000-0002-1510-3331
Racha GouarebGeneva School of Business Administration, HES-SO University of Applied Arts and Sciences of Western Switzerland, Carouge, Switzerland.ORCID 0000-0001-6611-2548
Nona NaderiGeneva School of Business Administration, HES-SO University of Applied Arts and Sciences of Western Switzerland, Carouge, Switzerland.ORCID 0000-0002-1272-7640
Poorya AminiRisklick AG, Bern, Switzerland.ORCID 0000-0002-9473-0172
University of Geneva · CHHES-SO University of Applied Sciences and Arts Western Switzerland · CHSIB Swiss Institute of Bioinformatics · CHUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe COVID-19 global health crisis has led to an exponential surge in published scientific literature. In an attempt to tackle the pandemic, extremely large COVID-19-related corpora are being created, sometimes with inaccurate information, which is no longer at scale of human analyses.

objectiveIn the context of searching for scientific evidence in the deluge of COVID-19-related literature, we present an information retrieval methodology for effective identification of relevant sources to answer biomedical queries posed using natural language.

methodsOur multistage retrieval methodology combines probabilistic weighting models and reranking algorithms based on deep neural architectures to boost the ranking of relevant documents. Similarity of COVID-19 queries is compared to documents, and a series of postprocessing methods is applied to the initial ranking list to improve the match between the query and the biomedical information source and boost the position of relevant documents.

resultsThe methodology was evaluated in the context of the TREC-COVID challenge, achieving competitive results with the top-ranking teams participating in the competition. Particularly, the combination of bag-of-words and deep neural language models significantly outperformed an Okapi Best Match 25-based baseline, retrieving on average, 83% of relevant documents in the top 20.

conclusionsThese results indicate that multistage retrieval supported by deep learning could enhance identification of literature for COVID-19-related questions posed using natural language.

Indexed as

COVID-19AlgorithmsHumansInformation Storage and RetrievalLanguageSARS-CoV-2coronavirusCOVID-19deep learninginfodemicinfodemiologyinformation retrievalliteraturemultistage retrievalneural searchonline information

Identifiers

PMID34375298
PMCPMC8451964
OpenAlexW3189818462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.