ArticleViruses2021
Illuminating the Plant Rhabdovirus Landscape through Metatranscriptomics Data.
Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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Who cites it
41 citing papers in PubMed, 81 citations in OpenAlex.
- Prevalence, Species Diversity, and Molecular Characterization of Viruses Infecting Phlox (Plants (Basel, Switzerland) · 2026Article
- Mining viruses in public databases unveils the diversity within the Deltaflexiviridae family.Archives of virology · 2026Article
- Expanding insights into plant rhabdovirus diversity through the discovery of viruses representing 32 putative novel species.Archives of virology · 2026Article
- Identification and characterization of a putative novel tri-segmented rhabdovirus infecting Humulus scandens.Archives of virology · 2026Article
- Red clover RNA virus 1: functional analysis of ORF2 protein, associations with co-infecting viruses, and seed transmission.Archives of virology · 2026Article
- Plant transcriptome data mining identified twenty-two putative novel taxa in the family Closteroviridae.Archives of virology · 2026Article
- Wild and globally traded ornamental aquatic plants harbor diverse plant viruses, including notable crop pathogens.Environmental microbiome · 2025Article
- Molecular Characterization of Tobacco Streak Virus, Beet Ringspot Virus, and Beet Ringspot Virus Satellite RNA from a New Natural Host,Plants (Basel, Switzerland) · 2025Article
- Article
- Trirhavirus: the first genus of tripartite viruses in the family Rhabdoviridae.Archives of virology · 2025Article
- Identification and complete genome sequence of honeysuckle-associated cytorhabdovirus in China.Archives of virology · 2025Article
- Exploring the Virome of Blackberry and Wild Rubus spp. in South Carolina.Phytobiomes journal · 2025Article
- Identification of nine putative novel members of plant-infecting alphaflexiviruses in public domain plant transcriptomes.Virusdisease · 2024Article
- Genomes of Alphanucleorhabdovirus Physostegiae Isolates from Two Different Cultivar Groups ofViruses · 2024Article
- Alpha- and Betagymnorhavirus: two new genera of gymnosperm-infecting viruses in the family Rhabdoviridae, subfamily Betarhabdovirinae.Archives of virology · 2024Article
- The plant rhabdovirus viroporin P9 facilitates insect-mediated virus transmission in barley.The Plant cell · 2024Article
- Exploring the viral landscape of saffron through metatranscriptomic analysis.Virus research · 2024Article
- Probing of plant transcriptomes reveals the hidden genetic diversity of the family Secoviridae.Archives of virology · 2024Article
- Novel Betanucleorhabdoviruses Infecting Elderberry (Pathogens (Basel, Switzerland) · 2024Article
- The complete genome sequence of a putative novel cytorhabdovirus identified in Chelidonium majus in China.Archives of virology · 2024Article
Corrections and comments
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Authors and funding
3 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rhabdoviruses infect a large number of plant species and cause significant crop diseases. They have a negative-sense, single-stranded unsegmented or bisegmented RNA genome. The number of plant-associated rhabdovirid sequences has grown in the last few years in concert with the extensive use of high-throughput sequencing platforms. Here, we report the discovery of 27 novel rhabdovirus genomes associated with 25 different host plant species and one insect, which were hidden in public databases. These viral sequences were identified through homology searches in more than 3000 plant and insect transcriptomes from the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) using known plant rhabdovirus sequences as the query. The identification, assembly and curation of raw SRA reads resulted in sixteen viral genome sequences with full-length coding regions and ten partial genomes. Highlights of the obtained sequences include viruses with unique and novel genome organizations among known plant rhabdoviruses. Phylogenetic analysis showed that thirteen of the novel viruses were related to cytorhabdoviruses, one to alphanucleorhabdoviruses, five to betanucleorhabdoviruses, one to dichorhaviruses and seven to varicosaviruses. These findings resulted in the most complete phylogeny of plant rhabdoviruses to date and shed new light on the phylogenetic relationships and evolutionary landscape of this group of plant viruses. Furthermore, this study provided additional evidence for the complexity and diversity of plant rhabdovirus genomes and demonstrated that analyzing SRA public data provides an invaluable tool to accelerate virus discovery, gain evolutionary insights and refine virus taxonomy.
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