Evidence map›Paper›PMID 34370559›Full record

ArticleJournal of bacteriology2021

Activation of the Type VI Secretion System in the Squid Symbiont

Stephanie Smith, Fernanda Salvato, Aditi Garikipati, Manuel Kleiner, Alecia N Septer

Open access · hybridAbstract read
In one paragraph

Article in Journal of bacteriology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. A prototrophic suppressor of aJournal of bacteriology · 2024
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. ThebioRxiv : the preprint server for biology · 2023
    Article
  9. The type-VI secretion system of the beneficial symbiontMicrobiology (Reading, England) · 2023
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Stephanie SmithDepartment of Earth, Marine and Environmental Sciences, University of North Carolina, Chapel Hill, North Carolina, USA.ORCID 0000-0002-3709-4464
Fernanda SalvatoDepartment of Plant and Microbial Biology, North Carolina State Universitygrid.40803.3f, Raleigh, North Carolina, USA.
Aditi GarikipatiDepartment of Earth, Marine and Environmental Sciences, University of North Carolina, Chapel Hill, North Carolina, USA.
Manuel KleinerDepartment of Plant and Microbial Biology, North Carolina State Universitygrid.40803.3f, Raleigh, North Carolina, USA.
Alecia N SepterDepartment of Earth, Marine and Environmental Sciences, University of North Carolina, Chapel Hill, North Carolina, USA.ORCID 0000-0002-9309-2930
University of North Carolina at Chapel Hill · USNorth Carolina State University · US

Funding

Genetic determinants of interbacterial competition during host colonizationR35GM137886 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Alecia Septer · 2020 to 2026
$2.6M
NIGMS NIH HHS R35 GM137886
6 · The paper itself

Abstract

Bacteria have evolved diverse strategies to compete for a niche, including the type VI secretion system (T6SS), a contact-dependent killing mechanism. T6SSs are common in bacterial pathogens, commensals, and beneficial symbionts, where they affect the diversity and spatial structure of host-associated microbial communities. Although T6SS gene clusters are often located on genomic islands (GIs), which may be transferred as a unit, the regulatory strategies that promote gene expression once the T6SS genes are transferred into a new cell are not known. We used the squid symbiont Vibrio fischeri to identify essential regulatory factors that control expression of a strain-specific T6SS encoded on a GI. We found that a transcriptional reporter for this T6SS is active only in strains that contain the T6SS-encoding GI, suggesting the GI encodes at least one essential regulator. A transposon screen identified seven mutants that could not activate the reporter. These mutations mapped exclusively to three genes on the T6SS-containing GI that encode two essential structural proteins (a TssA-like protein and TssM) and a transcriptional regulator (TasR). Using T6SS reporters, reverse transcription-PCR (RT-PCR), competition assays, and differential proteomics, we found that all three genes are required for expression of many T6SS components, except for the TssA-like protein and TssM, which are constitutively expressed. Based on these findings, we propose a model whereby T6SS expression requires conserved structural proteins, in addition to the essential regulator TasR, and this ability to self-regulate may be a strategy to activate T6SS expression upon transfer of T6SS-encoding elements into a new bacterial host.

Indexed as

Aliivibrio fischeriBacterial ProteinsGene Expression Regulation, BacterialGenotypeMutationPromoter Regions, GeneticType VI Secretion SystemsBacterial ProteinsType VI Secretion SystemsAliivibrio fischerigenomic islandmicrobial interactionssymbiosistype VI secretion systems

Identifiers

PMID34370559
PMCPMC8508121
OpenAlexW3187784803

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.