Evidence map›Paper›PMID 34370511›Full record

ArticleInfection and immunity2021

Characterization of Global Gene Expression, Regulation of Metal Ions, and Infection Outcomes in Immune-Competent 129S6 Mouse Macrophages.

Lara N Janiszewski, Michael Minson, Mary A Allen, Robin D Dowell, Amy E Palmer

Abstract read
In one paragraph

Article in Infection and immunity, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Metals to combat antimicrobial resistance.Nature reviews. Chemistry · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lara N JaniszewskiDepartment of Biochemistry and BioFrontiers Institute, University of Colorado Bouldergrid.266190.a, Boulder, Colorado, USA.
Michael MinsonDepartment of Biochemistry and BioFrontiers Institute, University of Colorado Bouldergrid.266190.a, Boulder, Colorado, USA.
Mary A AllenDepartment of Molecular Cellular Developmental Biology and BioFrontiers Institute, University of Colorado Bouldergrid.266190.a, Boulder, Colorado, USA.
Robin D DowellDepartment of Molecular Cellular Developmental Biology and BioFrontiers Institute, University of Colorado Bouldergrid.266190.a, Boulder, Colorado, USA.
Amy E PalmerDepartment of Biochemistry and BioFrontiers Institute, University of Colorado Bouldergrid.266190.a, Boulder, Colorado, USA.ORCID 0000-0002-5794-5983

Funding

Regulation of Cell Signaling by Transition Metal DynamicsDP1GM114863 · NIGMS · UNIVERSITY OF COLORADO · PI PALMER, AMY E · 2014 to 2018
$3.8M
lluminating the biochemistry of zinc and RNA in live cellsR35GM139644 · NIGMS · UNIVERSITY OF COLORADO · PI Amy E Palmer · 2021 to 2026
$3.7M
Function of RUNX1 in diverse Down syndrome tissuesR01HL156475 · NHLBI · UNIVERSITY OF COLORADO · PI ALLEN, MARY A · 2021 to 2023
$2.1M
A High-memory Supercomputer for Proteomics, Text Mining and Microbiome ResearchS10OD012300 · OD · UNIVERSITY OF COLORADO · PI AHN, NATALIE G. · 2013 to 2013
$1.9M
A Technique for Measuring Transcription Factor ActivityR01GM125871 · NIGMS · UNIVERSITY OF COLORADO · PI DOWELL-DEEN, ROBIN DEANNE · 2018 to 2021
$1.6M
FACSAria Fusion Cell SorterS10OD021601 · OD · UNIVERSITY OF COLORADO · PI LIU, XUEDONG · 2016 to 2016
$599k
NHLBI NIH HHS R01 HL156475NIGMS NIH HHS DP1 GM114863NIGMS NIH HHS R01 GM125871NIGMS NIH HHS R35 GM139644NIH HHS S10 OD012300NIH HHS S10 OD021601
6 · The paper itself

Abstract

Nutritional immunity involves cellular and physiological responses to invading pathogens, such as limiting iron, increasing exposure to bactericidal copper, and altering zinc to restrict the growth of pathogens. Here, we examine infection of bone marrow-derived macrophages from 129S6/SvEvTac mice by Salmonella enterica serovar Typhimurium. The 129S6/SvEvTac mice possess a functional Slc11a1 (Nramp-1), a phagosomal transporter of divalent cations that plays an important role in modulating metal availability to the pathogen. We carried out global RNA sequencing upon treatment with live or heat-killed Salmonella at 2 h and 18 h postinfection and observed widespread changes in metal transport, metal-dependent genes, and metal homeostasis genes, suggesting significant remodeling of iron, copper, and zinc availability by host cells. Changes in host cell gene expression suggest infection increases cytosolic zinc while simultaneously limiting zinc within the phagosome. Using a genetically encoded sensor, we demonstrate that cytosolic labile zinc increases 45-fold at 12 h postinfection. Further, manipulation of zinc in the medium alters bacterial clearance and replication, with zinc depletion inhibiting both processes. Comparing the transcriptomic changes to published data on infection of C57BL/6 macrophages revealed notable differences in metal regulation and the global immune response. Our results reveal that 129S6 macrophages represent a distinct model system compared to C57BL/6 macrophages. Further, our results indicate that manipulation of zinc at the host-pathogen interface is more nuanced than that of iron or copper. The 129S6 macrophages leverage intricate means of manipulating zinc availability and distribution to limit the pathogen's access to zinc, while simultaneously ensuring sufficient zinc to support the immune response.

Indexed as

AnimalsComplement System ProteinsFemaleGene ExpressionHost-Pathogen InteractionsMacrophagesMetalsMiceMice, Inbred C57BLSalmonella Infections, AnimalSalmonella typhimuriumZincComplement System ProteinsMetalsZincinfectionmacrophagesmetalnutritional immunityRNA-seqSalmonellaSlc11a1zinc

Identifiers

PMID34370511
PMCPMC8519282

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.