Evidence map›Paper›PMID 34368519›Full record

ArticleCurrent opinion in biomedical engineering2021

Recent developments in the characterization of nucleic acid hybridization kinetics.

Yuan-I Chen, Manasa P Sripati, Trung Duc Nguyen, Yin-Jui Chang, Yu-An Kuo, Soonwoo Hong, Hsin-Chih Yeh

Abstract read
In one paragraph

Article in Current opinion in biomedical engineering, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Recent Advances in Single-Molecule Tracking and Imaging Techniques.Annual review of analytical chemistry (Palo Alto, Calif.) · 2023
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuan-I ChenDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX 78712, USA.
Manasa P SripatiDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX 78712, USA.
Trung Duc NguyenDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX 78712, USA.
Yin-Jui ChangDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX 78712, USA.
Yu-An KuoDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX 78712, USA.
Soonwoo HongDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX 78712, USA.
Hsin-Chih YehDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX 78712, USA.

Funding

Turning a sequence barcode into a spectral barcode for single-cell analysis.R21GM129617 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI FINKELSTEIN, ILYA J, YEH, HSIN-CHIH · 2019 to 2020
$398k
NIGMS NIH HHS R21 GM129617
6 · The paper itself

Abstract

Hybridization of nucleic acids (NAs) is a fundamental molecular mechanism that drives many cellular processes and enables new biotechnologies as well as therapeutics. However, existing methods that measure hybridization kinetics of nucleic acids are either performed at the ensemble level or constrained to non-native physiological conditions. Recent advances in 3D single-molecule tracking techniques break these limitations by allowing multiple annealing and melting events to be observed on a single oligonucleotide freely diffusing inside a live mammalian cell. This review provides an overview of diverse approaches to measuring NA hybridization kinetics at the single-molecule level and in live cells, and concludes with a synopsis of unresolved challenges and opportunities in the live-cell hybridization kinetics measurements. Important discoveries made by NA kinetics measurements and biotechnologies that can be improved with a deeper understanding of hybridization kinetics are also described.

Indexed as

hybridization kineticslive-cell studiesnucleic acidssingle-molecule detectionsingle-molecule tracking

Identifiers

PMID34368519
PMCPMC8336926

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.