Evidence map›Paper›PMID 34368439›Full record

ArticleAPL photonics2020

Label-free colorectal cancer screening using deep learning and spatial light interference microscopy (SLIM).

Jingfang Kelly Zhang, Yuchen He, Nahil Sobh, Gabriel Popescu

Open access · goldAbstract read
In one paragraph

Article in APL photonics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
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  6. On the use of deep learning for phase recovery.Light, science & applications · 2024
    Review
  7. Review
  8. Article
  9. Article
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  11. Article
  12. Article
  13. Deep Learning in Biomedical Optics.Lasers in surgery and medicine · 2021
    Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jingfang Kelly ZhangQuantitative Light Imaging Laboratory, University of Illinois at Urbana-Champaign, 405 N. Matthews Avenue, Urbana, IL 61801, USA.
Yuchen HeQuantitative Light Imaging Laboratory, University of Illinois at Urbana-Champaign, 405 N. Matthews Avenue, Urbana, IL 61801, USA.
Nahil SobhQuantitative Light Imaging Laboratory, University of Illinois at Urbana-Champaign, 405 N. Matthews Avenue, Urbana, IL 61801, USA.
Gabriel PopescuQuantitative Light Imaging Laboratory, University of Illinois at Urbana-Champaign, 405 N. Matthews Avenue, Urbana, IL 61801, USA.
University of Illinois Urbana-Champaign · US

Funding

Quantitative histopathology for cancer prognosis using quantitative phase imaging on stained tissuesR01CA238191 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ANASTASIO, MARK A, ELICEIRI, KEVIN WILLIAM · 2019 to 2023
$3.1M
High accuracy optical growth assay of 3D cellular systemsR01GM129709 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BASHIR, RASHID · 2019 to 2022
$2.1M
Label-free classification of cell cycleR43GM133280 · NIGMS · PHI OPTICS, INC. · PI CHIRITESCU, CATALIN · 2019 to 2019
$225k
NCI NIH HHS R01 CA238191NIGMS NIH HHS R01 GM129709NIGMS NIH HHS R43 GM133280
6 · The paper itself

Abstract

Current pathology workflow involves staining of thin tissue slices, which otherwise would be transparent, followed by manual investigation under the microscope by a trained pathologist. While the hematoxylin and eosin (H&E) stain is well-established and a cost-effective method for visualizing histology slides, its color variability across preparations and subjectivity across clinicians remain unaddressed challenges. To mitigate these challenges, recently we have demonstrated that spatial light interference microscopy (SLIM) can provide a path to intrinsic, objective markers, that are independent of preparation and human bias. Additionally, the sensitivity of SLIM to collagen fibers yields information relevant to patient outcome, which is not available in H&E. Here, we show that deep learning and SLIM can form a powerful combination for screening applications: training on 1,660 SLIM images of colon glands and validating on 144 glands, we obtained a benign vs. cancer classification accuracy of 99%. We envision that the SLIM whole slide scanner presented here paired with artificial intelligence algorithms may prove valuable as a pre-screening method, economizing the clinician's time and effort.

Identifiers

PMID34368439
PMCPMC8341383
OpenAlexW3007823945

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.