Evidence map›Paper›PMID 34363538›Full record

ArticleAmino acids2021

Global effects of RAB3GAP1 dysexpression on the proteome of mouse cortical neurons.

Yanchen Liu, Fenfang Tian, Shuiming Li, Wei Chen, Weibo Gong, Hong Xie, Dan Liu, Rongzhong Huang, Wei Liao, Faping Yi and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Amino acids, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. First Clinical Report of TwoJournal of pediatric genetics · 2023
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Yanchen Liu *Institute of Neuroscience, Basic Medical College, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China.
Fenfang Tian *Institute of Neuroscience, Basic Medical College, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China.
Shuiming Li *Shenzhen Key Laboratory of Microbiology and Gene Engineering, Shenzhen University, Shenzhen, 518060, China.
Wei Chen *The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu, 610036, China.
Weibo GongInstitute of Neuroscience, Basic Medical College, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China.
Hong XieInstitute of Neuroscience, Basic Medical College, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China. xiehonggao@126.com.ORCID http://orcid.org/0000-0002-7573-2260
Dan LiuInstitute of Neuroscience, Basic Medical College, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China.
Rongzhong HuangStatistics Laboratory, ChuangXu Institute of Life Sciences, Chongqing, 400016, China.
Wei LiaoInstitute of Neuroscience, Basic Medical College, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China.
Faping YiInstitute of Neuroscience, Basic Medical College, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China.
Jian ZhouInstitute of Neuroscience, Basic Medical College, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China. zhoujian@cqmu.edu.cn.ORCID http://orcid.org/0000-0002-6392-3174
Chongqing Medical University · CNChongqing 2D Materials Institute (China) · CNFirst People's Hospital of Chongqing · CNShenzhen University · CNUniversity of Electronic Science and Technology of China · CN

Funding

Health and Family Planning Commission of Chongqing Nanan District 2018-03National Natural Science Foundation of China 31770890 and 31570826
6 · The paper itself

Abstract

Mounting studies have demonstrated that RAB3GAP1 expression is modified in brain diseases with multiple neurobiological functions and processes and acts as a potentially significant target. However, the cellular and molecular events arising from RAB3GAP1 dysexpression are still incompletely understood. In this work, underexpression and overexpression of RAB3GAP1 were first induced into cultured mouse cortical neurons by transfection with lentivirus plasmids. Then we globally explored the effects of RAB3GAP1 dysexpression on the proteome of the neurons through the use of isobaric tag for relative and absolute quantitation (iTRAQ)-based quantitative proteomics with bioinformatics. A total of 364 proteins in the RAB3GAP1-underexpression group and 314 proteins in the RAB3GAP1-overexpression group were identified to be differentially expressed. Subsequent bioinformatics analysis indicated that the proteome functional expression profiles induced by RAB3GAP1 underexpression and overexpression were different, suggesting the potential differences in biological processes and cellular effects. Subsequent intergroup cross-comparison revealed some candidate target proteins regulated directly by RAB3GAP1. Further parallel reaction monitoring (PRM) analysis illustrated that Sub1, Ssrp1, and Top1 proteins might serve as new potentially important linkers in the RAB3GAP1-mediated autophagy pathway in the cortical neurons. Collectively, the current proteomics data furnished new valuable insights to better understand the regulatory molecular mechanism of neuronal RAB3GAP1.

Indexed as

AnimalsCerebral CortexComputational BiologyMiceNeuronsProteomeProteomicsrab3 GTP-Binding ProteinsProteomerab3 GTP-Binding ProteinsCortical neuroniTRAQPRMQuantitative proteomicsRAB3GAP1

Identifiers

PMID34363538
OpenAlexW3193241147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.