Evidence map›Paper›PMID 34361890›Full record

ArticleMicroorganisms2021

First Evidence That Nematode Communities in Deadwood Are Related to Tree Species Identity and to Co-Occurring Fungi and Prokaryotes.

Julia Moll, Friederike Roy, Claus Bässler, Jacob Heilmann-Clausen, Martin Hofrichter, Harald Kellner, Doris Krabel, Jan Henrik Schmidt, François Buscot, Björn Hoppe

Abstract read
In one paragraph

Article in Microorganisms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Julia MollHelmholtz Centre for Environmental Research-UFZ, Department of Soil Ecology, 06120 Halle (Saale), Germany.ORCID 0000-0003-0621-4133
Friederike RoyHelmholtz Centre for Environmental Research-UFZ, Department of Soil Ecology, 06120 Halle (Saale), Germany.
Claus BässlerDepartment of Conservation Biology, Institute of Ecology, Evolution and Diversity, Goethe University Frankfurt, 60438 Frankfurt am Main, Germany.
Jacob Heilmann-ClausenCenter for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, 2100 Copenhagen, Denmark.
Martin HofrichterInstitute of Environmental Biotechnology, Technische Universität Dresden, IHI Zittau, 02763 Zittau, Germany.ORCID 0000-0001-5174-7604
Harald KellnerInstitute of Environmental Biotechnology, Technische Universität Dresden, IHI Zittau, 02763 Zittau, Germany.
Doris KrabelInstitute of Forest Botany, Technische Universität Dresden, 01737 Tharandt, Germany.
Jan Henrik SchmidtInstitute for Epidemiology and Pathogen Diagnostics, Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, 38104 Braunschweig, Germany.ORCID 0000-0002-6904-6336
François BuscotHelmholtz Centre for Environmental Research-UFZ, Department of Soil Ecology, 06120 Halle (Saale), Germany.ORCID 0000-0002-2364-0006
Björn HoppeInstitute for National and International Plant Health, Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, 38104 Braunschweig, Germany.ORCID 0000-0001-8689-4911

Funding

Deutsche Forschungsgemeinschaft BA5127/1-1, BU 941/17-1, HO 1961/6-1, HO 6077/1-3 and KE 1742/2-1
6 · The paper itself

Abstract

Nematodes represent a diverse and ubiquitous group of metazoans in terrestrial environments. They feed on bacteria, fungi, plants, other nematodes or parasitize a variety of animals and hence may be considered as active members of many food webs. Deadwood is a structural component of forest ecosystems which harbors many niches for diverse biota. As fungi and bacteria are among the most prominent decomposing colonizers of deadwood, we anticipated frequent and diverse nematode populations to co-occur in such ecosystems. However, knowledge about their ability to colonize this habitat is still limited. We applied DNA-based amplicon sequencing (metabarcoding) of the 18S rRNA gene to analyze nematode communities in sapwood and heartwood of decaying logs from 13 different tree species. We identified 247 nematode ASVs (amplicon sequence variants) from 27 families. Most of these identified families represent bacterial and fungal feeders. Their composition strongly depended on tree species identity in both wood compartments. While pH and water content were the only wood properties that contributed to nematodes' distribution, co-occurring fungal and prokaryotic (bacteria and archaea) α- and β-diversities were significantly related to nematode communities. By exploring thirteen different tree species, which exhibit a broad range of wood characteristics, this study provides first and comprehensive insights into nematode diversity in deadwood of temperate forests and indicates connectivity to other wood-inhabiting organisms.

Indexed as

amplicon sequencingbacteriadecompositionmetabarcodingnematode diversitytemperate foresttrophic interactions

Identifiers

PMID34361890
PMCPMC8304250

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.