Evidence map›Paper›PMID 34361882›Full record

ArticleMicroorganisms2021

The Role of the Respiratory Microbiome and Viral Presence in Lower Respiratory Tract Infection Severity in the First Five Years of Life.

Ivo Hoefnagels, Josephine van de Maat, Jeroen J A van Kampen, Annemarie van Rossum, Charlie Obihara, Gerdien A Tramper-Stranders, Astrid P Heikema, Willem de Koning, Anne-Marie van Wermerskerken, Deborah Horst-Kreft and 7 more

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Coinfection Patterns ofInternational journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 1 country.

Ivo HoefnagelsDepartment of General Pediatrics, Erasmus MC-Sophia Children's Hospital, 3015GD Rotterdam, The Netherlands.
Josephine van de MaatDepartment of General Pediatrics, Erasmus MC-Sophia Children's Hospital, 3015GD Rotterdam, The Netherlands.
Jeroen J A van KampenDepartment of Viroscience, Erasmus University Medical Centre (Erasmus MC), 3015GD Rotterdam, The Netherlands.ORCID 0000-0002-7625-8230
Annemarie van RossumDepartement of Pediatrics, division of Pediatric Infectious Diseases, Erasmus MC-Sophia Children's Hospital, 3015GD Rotterdam, The Netherlands.
Charlie ObiharaDepartment of Pediatrics, Elisabeth-TweeSteden Hospital, 5042AD Tilburg, The Netherlands.
Gerdien A Tramper-StrandersDepartment of Pediatrics, Franciscus Gasthuis & Vlietland, 3045PM Rotterdam, The Netherlands.
Astrid P HeikemaDepartment of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), 3015GD Rotterdam, The Netherlands.ORCID 0000-0001-7659-1917
Willem de KoningDepartment of Pathology, Clinical Bioinformatics Unit, Erasmus University Medical Centre (Erasmus MC), 3015GD Rotterdam, The Netherlands.ORCID 0000-0002-4594-8423
Anne-Marie van WermerskerkenDepartment of Pediatrics, Flevoziekenhuis, 1315RA Almere, The Netherlands.
Deborah Horst-KreftDepartment of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), 3015GD Rotterdam, The Netherlands.
Gertjan J A DriessenDepartment of Pediatrics, Maastricht University Medical Center, 3584CX Maastricht, The Netherlands.
Janine PuntDepartment of Pediatrics, Langeland Ziekenhuis, 2725NA Zoetermeer, The Netherlands.
Frank J SmitDepartment of Pediatrics, Maasstad Ziekenhuis, 3079DZ Rotterdam, The Netherlands.
Andrew StubbsDepartment of Pathology, Clinical Bioinformatics Unit, Erasmus University Medical Centre (Erasmus MC), 3015GD Rotterdam, The Netherlands.
Jeroen G NoordzijDepartment of Pediatrics, Reinier de Graaf Gasthuis, 2625AD Delft, The Netherlands.
John P HaysDepartment of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), 3015GD Rotterdam, The Netherlands.ORCID 0000-0001-9183-4497
Rianne OostenbrinkDepartment of General Pediatrics, Erasmus MC-Sophia Children's Hospital, 3015GD Rotterdam, The Netherlands.ORCID 0000-0001-7919-8934
Erasmus MC · NLErasmus MC - Sophia Children’s Hospital · NLElisabeth-TweeSteden Ziekenhuis · NLFlevoziekenhuis · NLLange Land Ziekenhuis · NLMaasstad Ziekenhuis · NLMaastricht University · NLRadboud University Nijmegen · NLReinier de Graaf Hospital · NLSint Franciscus Gasthuis · NL

Funding

ZonMw 836041001
6 · The paper itself

Abstract

Lower respiratory tract infections (LRTIs) in children are common and, although often mild, a major cause of mortality and hospitalization. Recently, the respiratory microbiome has been associated with both susceptibility and severity of LRTI. In this current study, we combined respiratory microbiome, viral, and clinical data to find associations with the severity of LRTI. Nasopharyngeal aspirates of children aged one month to five years included in the STRAP study (Study to Reduce Antibiotic prescription in childhood Pneumonia), who presented at the emergency department (ED) with fever and cough or dyspnea, were sequenced with nanopore 16S-rRNA gene sequencing and subsequently analyzed with hierarchical clustering to identify respiratory microbiome profiles. Samples were also tested using a panel of 15 respiratory viruses and

Indexed as

16S-rRNA genelower respiratory tract infectionnanopore sequencingrespiratory microbiomevirus

Identifiers

PMID34361882
PMCPMC8307314
OpenAlexW3183021637

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.