Evidence map›Paper›PMID 34360798›Full record

ArticleInternational journal of molecular sciences2021

Non-Covalent Forces in Naphthazarin-Cooperativity or Competition in the Light of Theoretical Approaches.

Aneta Jezierska, Kacper Błaziak, Sebastian Klahm, Arne Lüchow, Jarosław J Panek

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Aneta JezierskaFaculty of Chemistry, University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.ORCID 0000-0001-6601-9124
Kacper BłaziakFaculty of Chemistry, University of Warsaw, ul. Pasteura 1, 01-224 Warsaw, Poland.ORCID 0000-0003-4852-1254
Sebastian KlahmInstitute of Physical Chemistry, RWTH Aachen University, 52056 Aachen, Germany.ORCID 0000-0003-3724-6963
Arne LüchowInstitute of Physical Chemistry, RWTH Aachen University, 52056 Aachen, Germany.ORCID 0000-0002-1068-0674
Jarosław J PanekFaculty of Chemistry, University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.ORCID 0000-0002-2952-9739
RWTH Aachen University · DEUniversity of Wrocław · PLUniversity of Warsaw · PL

Funding

IDUB (Excellence Initiative - Research University 2020-2026) programme for the University ofWarsaw. 2021Narodowe Centrum Nauki UMO-2015/17/B/ST4/03568
6 · The paper itself

Abstract

Non-covalent interactions responsible for molecular features and self-assembly in Naphthazarin C polymorph were investigated on the basis of diverse theoretical approaches: Density Functional Theory (DFT), Diffusion Quantum Monte Carlo (DQMC), Symmetry-Adapted Perturbation Theory (SAPT) and Car-Parrinello Molecular Dynamics (CPMD). The proton reaction paths in the intramolecular hydrogen bridges were studied. Two potential energy minima were found indicating that the proton transfer phenomena occur in the electronic ground state. Diffusion Quantum Monte Carlo (DQMC) and other levels of theory including Coupled Cluster (CC) employment enabled an accurate inspection of Potential Energy Surface (PES) and revealed the energy barrier for the proton transfer. The structure and reactivity evolution associated with the proton transfer were investigated using Harmonic Oscillator Model of Aromaticity - HOMA index, Fukui functions and Atoms In Molecules (AIM) theory. The energy partitioning in the studied dimers was carried out based on Symmetry-Adapted Perturbation Theory (SAPT) indicating that dispersive forces are dominant in the structure stabilization. The CPMD simulations were performed at 60 K and 300 K in vacuo and in the crystalline phase. The temperature influence on the bridged protons dynamics was studied and showed that the proton transfer phenomena were not observed at 60 K, but the frequent events were noticed at 300 K in both studied phases. The spectroscopic signatures derived from the CPMD were computed using Fourier transformation of autocorrelation function of atomic velocity for the whole molecule and bridged protons. The computed gas-phase IR spectra showed two regions with OH absorption that covers frequencies from 2500 cm-1 to 2800 cm-1 at 60 K and from 2350 cm-1 to 3250 cm-1 at 300 K for both bridged protons. In comparison, the solid state computed IR spectra revealed the environmental influence on the vibrational features. For each of them absorption regions were found between 2700-3100 cm-1 and 2400-2850 cm-1 at 60 K and 2300-3300 cm-1 and 2300-3200 cm-1 at 300 K respectively. Therefore, the CPMD study results indicated that there is a cooperation of intramolecular hydrogen bonds in Naphthazarin molecule.

Indexed as

Molecular Dynamics SimulationHydrogen BondingNaphthoquinonesQuantum TheorynaphthazarinNaphthoquinones5,8-dihydroxynaphthalene-1,4-dioneAIMCCCPMDcrystalline phaseDFTDQMCFukui functiongas phaseHOMA indexhydrogen bondMP2Naphthazarin CSAPT

Identifiers

PMID34360798
PMCPMC8348774
OpenAlexW3184627018

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.