Evidence map›Paper›PMID 34360754›Full record

ArticleInternational journal of molecular sciences2021

Knockdown of PEX16 Induces Autophagic Degradation of Peroxisomes.

Xiaofan Wei, Yunash Maharjan, Debra Dorotea, Raghbendra-Kumar Dutta, Donghyun Kim, Hyunsoo Kim, Yizhu Mu, Channy Park, Raekil Park

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. The Peroxisome-Autophagy Redox Connection: A Double-Edged Sword?Frontiers in cell and developmental biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaofan WeiDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.
Yunash MaharjanDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.ORCID 0000-0003-0453-9778
Debra DoroteaDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.
Raghbendra-Kumar DuttaDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.ORCID 0000-0001-8183-6931
Donghyun KimDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.
Hyunsoo KimDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.
Yizhu MuDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.
Channy ParkDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.
Raekil ParkDepartment of Biomedical Science & Engineering, Gwangju Institute of Science and Technology, Gwangju 61005, Korea.ORCID 0000-0003-1146-599X
Gwangju Institute of Science and Technology · KR

Funding

National Research Foundation of Korea (NRF) 2018R1A5A1024340National Research Foundation of Korea (NRF) 2019R1A2C2086080
6 · The paper itself

Abstract

Peroxisome abundance is regulated by homeostasis between the peroxisomal biogenesis and degradation processes. Peroxin 16 (PEX16) is a peroxisomal protein involved in trafficking membrane proteins for de novo peroxisome biogenesis. The present study demonstrates that PEX16 also modulates peroxisome abundance through pexophagic degradation. PEX16 knockdown in human retinal pigment epithelial-1 cells decreased peroxisome abundance and function, represented by reductions in the expression of peroxisome membrane protein ABCD3 and the levels of cholesterol and plasmalogens, respectively. The activation of pexophagy under PEX16 knockdown was shown by (i) abrogated peroxisome loss under PEX16 knockdown in autophagy-deficient ATG5 knockout cell lines, and (ii) increased autophagy flux and co-localization of p62-an autophagy adaptor protein-with ABCD3 in the presence of the autophagy inhibitor chloroquine. However, the levels of cholesterol and plasmalogens did not recover despite the restoration of peroxisome abundance following chloroquine treatment. Thus, PEX16 is indispensable for maintaining peroxisome homeostasis by regulating not only the commonly known biogenesis pathway but also the autophagic degradation of peroxisomes.

Indexed as

AutophagyGene Knockdown TechniquesATP-Binding Cassette TransportersAutophagy-Related Protein 5Cell LineHumansMembrane ProteinsPeroxisomesRetinal Pigment EpitheliumABCD3 protein, humanATG5 protein, humanATP-Binding Cassette TransportersAutophagy-Related Protein 5Membrane ProteinsPEX16 protein, humanautophagychloroquineperoxinsperoxisomesPEX16pexophagy

Identifiers

PMID34360754
PMCPMC8348608
OpenAlexW3185478337

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.