Evidence map›Paper›PMID 34360570›Full record

ArticleInternational journal of molecular sciences2021

Invadopodia Structure in 3D Environment Resolved by Near-Infrared Branding Protocol Combining Correlative Confocal and FIB-SEM Microscopy.

Markéta Dalecká, Ján Sabó, Lenka Backová, Daniel Rösel, Jan Brábek, Aleš Benda, Ondřej Tolde

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Cytoplasmic Tail of MT1-MMP: A Hub of MT1-MMP Regulation and Function.International journal of molecular sciences · 2023
    Review
  3. Common methods in mitochondrial research (Review).International journal of molecular medicine · 2022
    Article
  4. Volume electron microscopy.Nature reviews. Methods primers · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Markéta DaleckáImaging Methods Core Facility at BIOCEV, Faculty of Science, Charles University, Průmyslová 595, 25242 Vestec u Prahy, Czech Republic.ORCID 0000-0003-4366-0255
Ján SabóImaging Methods Core Facility at BIOCEV, Faculty of Science, Charles University, Průmyslová 595, 25242 Vestec u Prahy, Czech Republic.ORCID 0000-0003-0568-6876
Lenka BackováImaging Methods Core Facility at BIOCEV, Faculty of Science, Charles University, Průmyslová 595, 25242 Vestec u Prahy, Czech Republic.ORCID 0000-0002-3076-2618
Daniel RöselDepartment of Cell Biology, Charles University, Viničná 7, 12800 Prague, Czech Republic.ORCID 0000-0001-7221-8672
Jan BrábekDepartment of Cell Biology, Charles University, Viničná 7, 12800 Prague, Czech Republic.ORCID 0000-0001-7754-7299
Aleš BendaImaging Methods Core Facility at BIOCEV, Faculty of Science, Charles University, Průmyslová 595, 25242 Vestec u Prahy, Czech Republic.ORCID 0000-0001-5829-8362
Ondřej ToldeDepartment of Cell Biology, Charles University, Viničná 7, 12800 Prague, Czech Republic.ORCID 0000-0002-3096-7381
Charles University · CZ

Funding

European Regional Development Fund No.CZ.02.1.01/0.0/0.0/16_013/0001775Grantová Agentura České Republiky 1815684JUniverzita Karlova v Praze 276321Univerzita Karlova v Praze PROGRES Q43Univerzita Karlova v Praze SVV 260432
6 · The paper itself

Abstract

Cancer cell invasion through tissue barriers is the intrinsic feature of metastasis, the most life-threatening aspect of cancer. Detailed observation and analysis of cancer cell behaviour in a 3D environment is essential for a full understanding of the mechanisms of cancer cell invasion. The inherent limits of optical microscopy resolution do not allow to for in-depth observation of intracellular structures, such as invadopodia of invading cancer cells. The required resolution can be achieved using electron microscopy techniques such as FIB-SEM. However, visualising cells in a 3D matrix using FIB-SEM is challenging due to difficulties with localisation of a specific cell deep within the resin block. We have developed a new protocol based on the near-infrared branding (NIRB) procedure that extends the pattern from the surface grid deep inside the resin. This 3D burned pattern allows for precise trimming followed by targeted 3D FIB-SEM. Here we present detailed 3D CLEM results combining confocal and FIB-SEM imaging of cancer cell invadopodia that extend deep into the collagen meshwork.

Indexed as

Breast NeoplasmsFemaleFibrosarcomaHumansImage Processing, Computer-AssistedImaging, Three-DimensionalMicroscopy, Electron, ScanningNeoplasm InvasivenessPodosomesSpectroscopy, Near-InfraredTumor Cells, CulturedCLEMFIB-SEMinvadopodiainvasivenessMT1-MMP

Identifiers

PMID34360570
PMCPMC8346040
OpenAlexW3183601738

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.