Evidence map›Paper›PMID 34357701›Full record

ArticleEMBO reports2021

Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture.

Andrea Vega, Isabel Fredes, José O'Brien, Zhouxin Shen, Krisztina Ötvös, Rashed Abualia, Eva Benkova, Steven P Briggs, Rodrigo A Gutiérrez

Open access · greenAbstract read
In one paragraph

Article in EMBO reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
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  5. PIF4 enhances the expression ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  14. Role of protein phosphatases in the regulation of nitrogen nutrition in plants.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Andrea VegaDepartamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile.ORCID 0000-0003-0841-5713
Isabel FredesDepartamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile.ORCID 0000-0002-4576-2995
José O'BrienDepartamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile.
Zhouxin ShenCell and Developmental Biology, University of California San Diego. San Diego, CA, USA.ORCID 0000-0002-7487-4064
Krisztina ÖtvösInstitute of Science and Technology (IST) Austria, Klosterneuburg, Austria.ORCID 0000-0002-5503-4983
Rashed AbualiaInstitute of Science and Technology (IST) Austria, Klosterneuburg, Austria.
Eva BenkovaInstitute of Science and Technology (IST) Austria, Klosterneuburg, Austria.ORCID 0000-0002-8510-9739
Steven P BriggsCell and Developmental Biology, University of California San Diego. San Diego, CA, USA.
Rodrigo A GutiérrezDepartamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile.ORCID 0000-0002-5961-5005
Pontificia Universidad Católica de Chile · CLInstitute of Science and Technology Austria · ATUniversity of California San Diego · USAustrian Institute of Technology · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrate commands genome-wide gene expression changes that impact metabolism, physiology, plant growth, and development. In an effort to identify new components involved in nitrate responses in plants, we analyze the Arabidopsis thaliana root phosphoproteome in response to nitrate treatments via liquid chromatography coupled to tandem mass spectrometry. 176 phosphoproteins show significant changes at 5 or 20 min after nitrate treatments. Proteins identified by 5 min include signaling components such as kinases or transcription factors. In contrast, by 20 min, proteins identified were associated with transporter activity or hormone metabolism functions, among others. The phosphorylation profile of NITRATE TRANSPORTER 1.1 (NRT1.1) mutant plants was significantly altered as compared to wild-type plants, confirming its key role in nitrate signaling pathways that involves phosphorylation changes. Integrative bioinformatics analysis highlights auxin transport as an important mechanism modulated by nitrate signaling at the post-translational level. We validated a new phosphorylation site in PIN2 and provide evidence that it functions in primary and lateral root growth responses to nitrate.

Indexed as

ArabidopsisArabidopsis ProteinsAnion Transport ProteinsMutationNitratesPlant ProteinsPlant RootsAnion Transport ProteinsArabidopsis ProteinsAT5G57090 protein, ArabidopsisNitratesNRT1.1 protein, ArabidopsisPlant ProteinsauxinHPLC-MS/MSnitrate signalingnitrogen responsephosphorylation

Identifiers

PMID34357701
PMCPMC8447600
OpenAlexW3191109908

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.