Evidence map›Paper›PMID 34356607›Full record

ArticleBiomolecules2021

Identification of HSP47 Binding Site on Native Collagen and Its Implications for the Development of HSP47 Inhibitors.

Haiyan Cai, Parvathy Sasikumar, Gemma Little, Dominique Bihan, Samir W Hamaia, Aiwu Zhou, Jonathan M Gibbins, Richard W Farndale

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Failed Cellular Surveillance Enables Pathogenic Matrix Deposition in abioRxiv : the preprint server for biology · 2025
    Article
  4. Deciphering the folding code of collagens.Nature communications · 2025
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Haiyan CaiKey Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Department of Pathophysiology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, China.
Parvathy SasikumarInstitute for Cardiovascular & Metabolic Research, School of Biological Sciences, University of Reading, Health and Life Sciences Building, Whiteknights, Reading RG6 6EX, UK.
Gemma LittleInstitute for Cardiovascular & Metabolic Research, School of Biological Sciences, University of Reading, Health and Life Sciences Building, Whiteknights, Reading RG6 6EX, UK.ORCID 0000-0001-9810-4358
Dominique BihanDepartment of Biochemistry, University of Cambridge, Downing Site, Cambridge CB2 1QW, UK.
Samir W HamaiaDepartment of Biochemistry, University of Cambridge, Downing Site, Cambridge CB2 1QW, UK.
Aiwu ZhouKey Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Department of Pathophysiology, Shanghai JiaoTong University School of Medicine, Shanghai 200025, China.ORCID 0000-0002-2555-5091
Jonathan M GibbinsInstitute for Cardiovascular & Metabolic Research, School of Biological Sciences, University of Reading, Health and Life Sciences Building, Whiteknights, Reading RG6 6EX, UK.ORCID 0000-0002-0372-5352
Richard W FarndaleDepartment of Biochemistry, University of Cambridge, Downing Site, Cambridge CB2 1QW, UK.ORCID 0000-0001-6130-8808
University of Cambridge · GBUniversity of Reading · GBShanghai Jiao Tong University · CN

Funding

British Heart Foundation FS/11/86/29137British Heart Foundation FS/17/31/32848British Heart Foundation RG/09/003/27122British Heart Foundation RG/15/4/31268National Natural Science Foundation of China 81502981Wellcome Trust, Biomedical Resource Grant 094470/Z/10/Z
6 · The paper itself

Abstract

HSP47 (heat shock protein 47) is a collagen-specific molecular chaperone that is essential for procollagen folding and function. Previous studies have shown that HSP47 binding requires a critical Arg residue at the Y position of the (Gly-Xaa-Yaa) repeats of collagen; however, the exact binding sites of HSP47 on native collagens are not fully defined. To address this, we mapped the HSP47 binding sites on collagens through an ELISA binding assay using collagen toolkits, synthetic collagen peptides covering the entire amino acid sequences of collagen types II and III assembled in triple-helical conformation. Our results showed that HSP47 binds to only a few of the GXR motifs in collagen, with most of the HSP47 binding sites identified located near the N-terminal part of the triple-helical region. Molecular modelling and binding energy calculation indicated that residues flanking the key Arg in the collagen sequence also play an important role in defining the high-affinity HSP47 binding site of collagen. Based on this binding mode of HSP47 to collagen, virtual screening targeting both the Arg binding site and its neighboring area on the HSP47 surface, and a subsequent bioassay, we identified two novel compounds with blocking activity towards HSP47 binding of collagen. Overall, our study revealed the native HSP47 binding sites on collagen and provided novel information for the design of small-molecule inhibitors of HSP47.

Indexed as

Molecular Docking SimulationBinding SitesCollagenHSP47 Heat-Shock ProteinsHumansCollagenHSP47 Heat-Shock ProteinsSERPINH1 protein, humancollagenfibrosisHSP47 inhibitormolecular dockingstructural analysis

Identifiers

PMID34356607
PMCPMC8301893
OpenAlexW3177691960

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.