Evidence map›Paper›PMID 34355146›Full record

ArticleiScience2021

Prolonged norovirus infections correlate to quasispecies evolution resulting in structural changes of surface-exposed epitopes.

Suliman Qadir Afridi, Zainab Usman, Sainitin Donakonda, Jochen Martin Wettengel, Stoyan Velkov, Robert Beck, Markus Gerhard, Percy Knolle, Dmitrij Frishman, Ulrike Protzer and 2 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Suliman Qadir AfridiInstitute of Virology, Technische Universität/Helmholtz Zentrum München, 81675 Munich, Germany.
Zainab UsmanDepartment of Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München, 85354 Freising, Germany.
Sainitin DonakondaInstitute of Molecular Immunology and Experimental Oncology, Technische Universität München, 81675 Munich, Germany.
Jochen Martin WettengelInstitute of Virology, Technische Universität/Helmholtz Zentrum München, 81675 Munich, Germany.
Stoyan VelkovInstitute of Virology, Technische Universität/Helmholtz Zentrum München, 81675 Munich, Germany.
Robert BeckInstitute of Medical Virology and Epidemiology of Viral diseases, Universitäts Klinikum Tübingen, 72076 Tübingen, Germany.
Markus GerhardInstitute of Medical Microbiology, Immunology and Hygiene, Technische Universität München, 81675 Munich, Germany.
Percy KnolleInstitute of Molecular Immunology and Experimental Oncology, Technische Universität München, 81675 Munich, Germany.
Dmitrij FrishmanDepartment of Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München, 85354 Freising, Germany.
Ulrike ProtzerInstitute of Virology, Technische Universität/Helmholtz Zentrum München, 81675 Munich, Germany.
Hassan MoeiniInstitute of Virology, Technische Universität/Helmholtz Zentrum München, 81675 Munich, Germany.
Dieter HoffmannInstitute of Virology, Technische Universität/Helmholtz Zentrum München, 81675 Munich, Germany.
Helmholtz Zentrum München · DEGerman Center for Infection Research · DEWeihenstephan-Triesdorf University of Applied Sciences · DEUniversitätsklinikum Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we analyzed norovirus (NoV) evolution in sequential samples of six chronically infected patients. The capsid gene was amplified from stool samples, and deep sequencing was performed. The role of amino acid flexibility in structural changes and ligand binding was studied with molecular dynamics (MD) simulations. Concentrations of capsid-specific antibodies increased in sequential sera. Capsid sequences accumulated mutations during chronic infection, particularly in the surface-exposed antigenic epitopes A, D, and E. The number of quasispecies increased in infections lasting for >1 month. Interestingly, high genetic complexity and distances were followed by ongoing NoV replication, whereas lower genetic complexity and distances preceded cure. MD simulation revealed that surface-exposed amino acid substitutions of the P2 domain caused fluctuation of blockade epitopes. In conclusion, the capsid protein accumulates numerous mutations during chronic infection; however, only those on the protein surface change the protein structure substantially and may lead to immune escape.

Indexed as

Molecular modelingVirology

Identifiers

PMID34355146
PMCPMC8324856
OpenAlexW3175239498

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.