Evidence map›Paper›PMID 34354329›Full record

ArticleStatistics and computing2021

Scalable Bayesian inference for self-excitatory stochastic processes applied to big American gunfire data.

Andrew J Holbrook, Charles E Loeffler, Seth R Flaxman, Marc A Suchard

Abstract read
In one paragraph

Article in Statistics and computing, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Parallel MCMC algorithms: theoretical foundations, algorithm design, case studies.Transactions of mathematics and its applications : a journal of the IMA · 2024
    Article
  2. Review
  3. A quantum parallel Markov chain Monte Carlo.Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2023
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

4 authors.

Andrew J HolbrookDepartment of Biostatistics, University of California, Los Angeles, Los Angeles, USA.ORCID 0000-0002-3558-200X
Charles E LoefflerDepartment of Criminology, University of Pennsylvania, Philadelphia, USA.
Seth R FlaxmanDepartment of Mathematics, Imperial College London, London, UK.
Marc A SuchardDepartment of Biostatistics, University of California, Los Angeles, Los Angeles, USA.

Funding

Technology CoreU19AI135995 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI Laura D. Hughes · 2018 to 2026
$32.0M
Big Data Predictive Phylogenetics with Bayesian LearningK25AI153816 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HOLBROOK, ANDREW JAMES · 2020 to 2024
$532k
NIAID NIH HHS K25 AI153816NIAID NIH HHS U19 AI135995
6 · The paper itself

Abstract

The Hawkes process and its extensions effectively model self-excitatory phenomena including earthquakes, viral pandemics, financial transactions, neural spike trains and the spread of memes through social networks. The usefulness of these stochastic process models within a host of economic sectors and scientific disciplines is undercut by the processes' computational burden: complexity of likelihood evaluations grows quadratically in the number of observations for both the temporal and spatiotemporal Hawkes processes. We show that, with care, one may parallelize these calculations using both central and graphics processing unit implementations to achieve over 100-fold speedups over single-core processing. Using a simple adaptive Metropolis-Hastings scheme, we apply our high-performance computing framework to a Bayesian analysis of big gunshot data generated in Washington D.C. between the years of 2006 and 2019, thereby extending a past analysis of the same data from under 10,000 to over 85,000 observations. To encourage widespread use, we provide hpHawkes, an open-source R package, and discuss high-level implementation and program design for leveraging aspects of computational hardware that become necessary in a big data setting.

Indexed as

GPUMassive parallelizationSIMDSpatiotemporal Hawkes process

Identifiers

PMID34354329
PMCPMC8330599

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.