Evidence map›Paper›PMID 34354228›Full record

ArticleCommunications biology2021

The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon.

Yuya Taguchi, Takahiro Yamasaki, Marie Ishikawa, Yuki Kawasaki, Ryuji Yukimura, Maki Mitani, Kunio Hirata, Daisuke Kohda

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yuya Taguchi *Division of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Takahiro Yamasaki *Division of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Marie IshikawaDivision of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Yuki KawasakiDivision of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Ryuji YukimuraDivision of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Maki MitaniDivision of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Kunio HirataRIKEN SPring-8 Center, Sayo, Hyogo, Japan.ORCID http://orcid.org/0000-0002-1491-6509
Daisuke KohdaDivision of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan. kohda@bioreg.kyushu-u.ac.jp.ORCID http://orcid.org/0000-0001-8234-3776
Kyushu University · JPNEC (Japan) · JPSPring-8 · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oligosaccharyltransferase (OST) catalyzes oligosaccharide transfer to the Asn residue in the N-glycosylation sequon, Asn-X-Ser/Thr, where Pro is strictly excluded at position X. Considering the unique structural properties of proline, this exclusion may not be surprising, but the structural basis for the rejection of Pro residues should be explained explicitly. Here we determined the crystal structure of an archaeal OST in a complex with a sequon-containing peptide and dolichol-phosphate to a 2.7 Å resolution. The sequon part in the peptide forms two inter-chain hydrogen bonds with a conserved amino acid motif, TIXE. We confirmed the essential role of the TIXE motif and the adjacent regions by extensive alanine-scanning of the external loop 5. A Ramachandran plot revealed that the ring structure of the Pro side chain is incompatible with the ϕ backbone dihedral angle around -150° in the rigid sequon-TIXE structure. The present structure clearly provides the structural basis for the exclusion of Pro residues from the N-glycosylation sequon.

Indexed as

Archaeal ProteinsArchaeoglobus fulgidusGlycosylationHexosyltransferasesMembrane ProteinsProlineArchaeal Proteinsdolichyl-diphosphooligosaccharide - protein glycotransferaseHexosyltransferasesMembrane ProteinsProline

Identifiers

PMID34354228
PMCPMC8342417
OpenAlexW3189989046

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.