ArticleScientific reports2021
Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils.
Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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23 citing papers in PubMed, 67 citations in OpenAlex.
- Can Organic Amendments Override Environmental Filtering of Soil Microbiomes? Evidence From 20 Years Old Agricultural Field Trials in Contrasting Tropical Sites.Global change biology · 2026Article
- Aspergillus niger ZJ-17 enhances the yield and quality of Angelica dahurica var. formosana by modulating beneficial rhizobacteria: a sustainable strategy for plant production.BMC plant biology · 2026Article
- A metagenomic survey of the rhizosphere bacterial community of P. longum from the herbal garden, Dayalbagh Educational Institute (D.E.I), Agra, India.World journal of microbiology & biotechnology · 2026Article
- Lotus-fish co-culture reshapes pond microbiota and improves ecological stability relative to fish monoculture.Frontiers in microbiology · 2026Article
- Historic mine waste contains diverse microbial communities that reflect waste type and geochemistry.Applied and environmental microbiology · 2025Article
- I-SVVS: integrative stochastic variational variable selection to explore joint patterns of multi-omics microbiome data.Briefings in bioinformatics · 2025Article
- Probe Capture Enrichment Sequencing of amoA Genes Improves the Detection of Diverse Ammonia-Oxidising Archaeal and Bacterial Populations.Molecular ecology resources · 2025Article
- The Fungal and Protist Community as Affected by Tillage, Crop Residue Burning and N Fertilizer Application.Current microbiology · 2025Article
- Metagenomic insights into short-term legume rotation: modulating potato rhizosphere microbiota to enhance tuber yield and quality.Frontiers in microbiology · 2025Article
- Inoculation frequency and maize genotype influence plant growth-promoting effects of soil bacteria under low nitrogen conditions.Frontiers in plant science · 2025Article
- Correlating Microbial Dynamics with Key Metabolomic Profiles in Three Submerged Culture-Produced Vinegars.Foods (Basel, Switzerland) · 2024Article
- Nitrifying niche in estuaries is expanded by the plastisphere.Nature communications · 2024Article
- Article
- Prolonged water limitation shifts the soil microbiome from copiotrophic to oligotrophic lifestyles in Scots pine mesocosms.Environmental microbiology reports · 2024Article
- Increases in the soil ammonia oxidizing phylotypes and their rechange due to long-term irrigation with wastewater.PloS one · 2024Article
- Culturomics- and metagenomics-based insights into the soil microbiome preservation and application for sustainable agriculture.Frontiers in microbiology · 2024Review
- Microbial Catabolic Activity: Methods, Pertinence, and Potential Interest for Improving Microbial Inoculant Efficiency.Microbial ecology · 2023Review
- Effects of 5-year experimental warming in the Alpine belt on soil Archaea: Multi-omics approaches and prospects.Environmental microbiology reports · 2023Article
- Effects of sulfadiazine and Cu on soil potential nitrification and ammonia-oxidizing archaea and bacteria communities across different soils.Frontiers in microbiology · 2023Article
- Draft Metagenome-Assembled Genome Sequences of Three Novel Ammonia-OxidizingMicrobiology resource announcements · 2022Article
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5 authors at 1 institution in 1 country.
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Abstract
The abundance and phylogenetic diversity of functional genes involved in nitrification were assessed in Rothamsted field plots under contrasting management regimes-permanent bare fallow, grassland, and arable (wheat) cultivation maintained for more than 50 years. Metagenome and metatranscriptome analysis indicated nitrite oxidizing bacteria (NOB) were more abundant than ammonia oxidizing archaea (AOA) and bacteria (AOB) in all soils. The most abundant AOA and AOB in the metagenomes were, respectively, Nitrososphaera and Ca. Nitrososcosmicus (family Nitrososphaeraceae) and Nitrosospira and Nitrosomonas (family Nitrosomonadaceae). The most abundant NOB were Nitrospira including the comammox species Nitrospira inopinata, Ca. N. nitrificans and Ca. N. nitrosa. Anammox bacteria were also detected. Nitrospira and the AOA Nitrososphaeraceae showed most transcriptional activity in arable soil. Similar numbers of sequences were assigned to the amoA genes of AOA and AOB, highest in the arable soil metagenome and metatranscriptome; AOB amoA reads included those from comammox Nitrospira clades A and B, in addition to Nitrosomonadaceae. Nitrification potential assessed in soil from the experimental sites (microcosms amended or not with DCD at concentrations inhibitory to AOB but not AOA), was highest in arable samples and lower in all assays containing DCD, indicating AOB were responsible for oxidizing ammonium fertilizer added to these soils.
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