Evidence map›Paper›PMID 34354115›Full record

ArticleScientific reports2021

Whole blood gene expression within days after total-body irradiation predicts long term survival in Gottingen minipigs.

Sunita Chopra, Maria Moroni, Jaleal Sanjak, Laurel MacMillan, Bernadette Hritzo, Shannon Martello, Michelle Bylicky, Jared May, C Norman Coleman, Molykutty J Aryankalayil

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Biomarkers to Predict Lethal Radiation Injury to the Rat Lung.International journal of molecular sciences · 2023
    Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Sunita ChopraNational Cancer Institute (NCI), National Institutes of Health, Bethesda, MD, 20892, USA.
Maria MoroniArmed Forces Radiobiological Research Institute, Bethesda, MD, 20889, USA.
Jaleal SanjakGryphon Scientific, Takoma Park, MD, 20912, USA.
Laurel MacMillanGryphon Scientific, Takoma Park, MD, 20912, USA.
Bernadette HritzoArmed Forces Radiobiological Research Institute, Bethesda, MD, 20889, USA.
Shannon MartelloNational Cancer Institute (NCI), National Institutes of Health, Bethesda, MD, 20892, USA.
Michelle BylickyNational Cancer Institute (NCI), National Institutes of Health, Bethesda, MD, 20892, USA.
Jared MayNational Cancer Institute (NCI), National Institutes of Health, Bethesda, MD, 20892, USA.
C Norman ColemanNational Cancer Institute (NCI), National Institutes of Health, Bethesda, MD, 20892, USA. ccoleman@mail.nih.gov.
Molykutty J AryankalayilNational Cancer Institute (NCI), National Institutes of Health, Bethesda, MD, 20892, USA. aryankalayilm@mail.nih.gov.
National Institutes of Health · USArmed Forces Institute of Pathology · USGryphon Scientific (United States) · USNational Cancer Institute · USCenter for Cancer Research · US

Funding

Radiation-induced molecular targetsZIABC010670 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI COLEMAN, NORMAN · 2009 to 2024
$17.3M
Molecular-Targeted Radiation TherapyZ01BC010670 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI COLEMAN, C NORMAN · 2005 to 2008
$1.4M
Intramural NIH HHS Z01 BC010670Intramural NIH HHS ZIA BC010670
6 · The paper itself

Abstract

Gottingen minipigs mirror the physiological radiation response observed in humans and hence make an ideal candidate model for studying radiation biodosimetry for both limited-sized and mass casualty incidents. We examined the whole blood gene expression profiles starting one day after total-body irradiation with increasing doses of gamma-rays. The minipigs were monitored for up to 45 days or time to euthanasia necessitated by radiation effects. We successfully identified dose- and time-agnostic (over a 1-7 day period after radiation), survival-predictive gene expression signatures derived using machine-learning algorithms with high sensitivity and specificity. These survival-predictive signatures fare better than an optimally performing dose-differentiating signature or blood cellular profiles. These findings suggest that prediction of survival is a much more useful parameter for making triage, resource-utilization and treatment decisions in a resource-constrained environment compared to predictions of total dose received. It should hopefully be possible to build such classifiers for humans in the future.

Indexed as

AnimalsBiomarkersBlood CellsDose-Response Relationship, RadiationGamma RaysGene ExpressionGene Expression ProfilingGene Expression RegulationPrognosisRadiation InjuriesSwineSwine, MiniatureTranscriptomeWhole-Body IrradiationBiomarkers

Identifiers

PMID34354115
PMCPMC8342483
OpenAlexW3190345069

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.