Evidence map›Paper›PMID 34354069›Full record

ArticleNature communications2021

The middle lipin domain adopts a membrane-binding dimeric protein fold.

Weijing Gu, Shujuan Gao, Huan Wang, Kaelin D Fleming, Reece M Hoffmann, Jong Won Yang, Nimi M Patel, Yong Mi Choi, John E Burke, Karen Reue and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. The Inner Nuclear Membrane Has a Unique Lipid Signature.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  3. Review
  4. Article
  5. Review
  6. Architecture and function of yeast phosphatidate phosphatase Pah1 domains/regions.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Role of lipins in cardiovascular diseases.Lipids in health and disease · 2023
    Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Weijing Gu *Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.ORCID http://orcid.org/0000-0001-9464-2298
Shujuan Gao *Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Huan Wang *Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-1115-143X
Kaelin D FlemingDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada.ORCID http://orcid.org/0000-0003-3063-7865
Reece M HoffmannDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada.
Jong Won YangDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Nimi M PatelDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.ORCID http://orcid.org/0000-0001-5744-4663
Yong Mi ChoiDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
John E BurkeDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada.ORCID http://orcid.org/0000-0001-7904-9859
Karen ReueDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA. reuek@ucla.edu.ORCID http://orcid.org/0000-0002-7487-2624
Michael V AirolaDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA. michael.airola@stonybrook.edu.ORCID http://orcid.org/0000-0003-4981-1253
Stony Brook University · USUniversity of Victoria · CAUniversity of California, Los Angeles · US

Funding

Systems genomics of metabolic syndrome traitsP01HL028481 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 1985 to 2019
$50.2M
The Lipin Protein Family and Triglyceride Metabolism P01HL090553 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI YOUNG, STEPHEN G. · 2008 to 2018
$23.3M
Structure and regulation of lipid metabolism and transportR35GM128666 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Michael Virgil Airola · 2018 to 2026
$4.0M
NHLBI NIH HHS P01 HL028481NHLBI NIH HHS P01 HL090553NIGMS NIH HHS R35 GM128666
6 · The paper itself

Abstract

Phospholipid synthesis and fat storage as triglycerides are regulated by lipin phosphatidic acid phosphatases (PAPs), whose enzymatic PAP function requires association with cellular membranes. Using hydrogen deuterium exchange mass spectrometry, we find mouse lipin 1 binds membranes through an N-terminal amphipathic helix, the Ig-like domain and HAD phosphatase catalytic core, and a middle lipin (M-Lip) domain that is conserved in mammalian and mammalian-like lipins. Crystal structures of the M-Lip domain reveal a previously unrecognized protein fold that dimerizes. The isolated M-Lip domain binds membranes both in vitro and in cells through conserved basic and hydrophobic residues. Deletion of the M-Lip domain in lipin 1 reduces PAP activity, membrane association, and oligomerization, alters subcellular localization, diminishes acceleration of adipocyte differentiation, but does not affect transcriptional co-activation. This establishes the M-Lip domain as a dimeric protein fold that binds membranes and is critical for full functionality of mammalian lipins.

Indexed as

3T3-L1 CellsAdipogenesisAmino Acid SequenceAnimalsCell MembraneConserved SequenceCrystallography, X-RayHEK293 CellsHumansHydrogen Deuterium Exchange-Mass SpectrometryMembrane ProteinsMiceModels, MolecularMolecular Dynamics SimulationPhosphatidate PhosphataseProtein BindingLpin1 protein, mouseMembrane ProteinsPhosphatidate PhosphataseRecombinant Proteins

Identifiers

PMID34354069
PMCPMC8342540
OpenAlexW3190136996

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.