ArticleMolecular ecology resources2022
Pseudoreplication in genomic-scale data sets.
Article in Molecular ecology resources, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed.
- Combining Multiple Genetic Estimates of NMolecular ecology resources · 2026Article
- The Genomics Revolution in Nonmodel Species: Predictions vs. Reality for Salmonids.Molecular ecology · 2025Review
- Maximising the Potential of TemporalMolecular ecology resources · 2025Article
- MaxTemp: A Method to Maximise Precision of the Temporal Method for Estimating NMolecular ecology resources · 2025Article
- Effective Population Size Estimation in Large Marine Populations: Considering Current Challenges and Opportunities When Simulating Large Data Sets With High-Density Genomic Information.Evolutionary applications · 2025Review
- Estimating Recent and Historical Effective Population Size of Marine and Freshwater Sticklebacks.Molecular ecology · 2025Article
- The Once and Future Fish: Assessing a Millennium of Atlantic Herring Exploitation Through Mixed-Stock Analysis and Ancient DNA.Global change biology · 2024Article
- Levels and Spatial Patterns of Effective Population Sizes in the Southern Damselfly (Evolutionary applications · 2024Article
- Unraveling the Complexity of theEvolutionary applications · 2024Review
- Potential Benefits and Challenges of Quantifying Pseudoreplication in Genomic Data with Entropy Statistics.Entropy (Basel, Switzerland) · 2024Article
- TheEvolutionary applications · 2024Article
- Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets.Evolutionary applications · 2024Article
- Evaluating the utility of effective breeding size estimates for monitoring sea lamprey spawning abundance.Ecology and evolution · 2023Article
- Effective population size in a partially clonal plant is not predicted by the number of genetic individuals.Evolutionary applications · 2023Article
- High dispersal rates in hybrids drive expansion of maladaptive hybridization.Proceedings. Biological sciences · 2022Article
- Commonly used Hardy-Weinberg equilibrium filtering schemes impact population structure inferences using RADseq data.Molecular ecology resources · 2022Article
- Bray-Curtis (AFD) differentiation in molecular ecology: Forecasting, an adjustment (Ecology and evolution · 2022Article
- Parallel recolonizations generate distinct genomic sectors in kelp following high-magnitude earthquake disturbance.Molecular ecology · 2022Article
- Pedigree analysis and estimates of effective breeding size characterize sea lamprey reproductive biology.Evolutionary applications · 2022Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
In genomic-scale data sets, loci are closely packed within chromosomes and hence provide correlated information. Averaging across loci as if they were independent creates pseudoreplication, which reduces the effective degrees of freedom (df') compared to the nominal degrees of freedom, df. This issue has been known for some time, but consequences have not been systematically quantified across the entire genome. Here, we measured pseudoreplication (quantified by the ratio df'/df) for a common metric of genetic differentiation (F
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.