Evidence map›Paper›PMID 34349756›Full record

ArticleFrontiers in immunology2021

Influence of HLA Class II Polymorphism on Predicted Cellular Immunity Against SARS-CoV-2 at the Population and Individual Level.

Hannah C Copley, Loren Gragert, Andrew R Leach, Vasilis Kosmoliaptsis

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Hannah C CopleyDepartment of Surgery, Addenbrooke's Hospital, University of Cambridge, Cambridge, United Kingdom.
Loren GragertDepartment of Pathology, Tulane University School of Medicine, New Orleans, LA, United States.
Andrew R LeachEuropean Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom.
Vasilis KosmoliaptsisDepartment of Surgery, Addenbrooke's Hospital, University of Cambridge, Cambridge, United Kingdom.
European Bioinformatics Institute · GBNIHR Cambridge Biomedical Research CentreTulane University · US

Funding

Medical Research Council MR/S006745/1
6 · The paper itself

Abstract

Development of adaptive immunity after COVID-19 and after vaccination against SARS-CoV-2 is predicated on recognition of viral peptides, presented on HLA class II molecules, by CD4+ T-cells. We capitalised on extensive high-resolution HLA data on twenty five human race/ethnic populations to investigate the role of HLA polymorphism on SARS-CoV-2 immunogenicity at the population and individual level. Within populations, we identify wide inter-individual variability in predicted peptide presentation from structural, non-structural and accessory SARS-CoV-2 proteins, according to individual HLA genotype. However, we find similar potential for anti-SARS-CoV-2 cellular immunity at the population level suggesting that HLA polymorphism is unlikely to account for observed disparities in clinical outcomes after COVID-19 among different race/ethnic groups. Our findings provide important insight on the potential role of HLA polymorphism on development of protective immunity after SARS-CoV-2 infection and after vaccination and a firm basis for further experimental studies in this field.

Indexed as

Immunity, CellularAntigen PresentationCD4-Positive T-LymphocytesCOVID-19GenotypeHistocompatibility Antigens Class IIHumansPeptidesPolymorphism, GeneticProteomeSARS-CoV-2Viral ProteinsHistocompatibility Antigens Class IIPeptidesProteomeViral Proteinscellular immunityCOVID-19human leukocyte antigensSARS-CoV-2T-cells

Identifiers

PMID34349756
PMCPMC8327207
OpenAlexW3183503090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.