Evidence map›Paper›PMID 34347243›Full record

ReviewNeuroinformatics2022

Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org).

Abel Torres-Espín, Carlos A Almeida, Austin Chou, J Russell Huie, Michael Chiu, Romana Vavrek, Jeff Sacramento, Michael B Orr, John C Gensel, Jeffery S Grethe and 4 more

Abstract readReview
In one paragraph

Review in Neuroinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Molecular signaling predicts corticospinal axon growth state and muscle response plasticity induced by neuromodulation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Challenges in Translating Regenerative Therapies for Spinal Cord Injury.Topics in spinal cord injury rehabilitation · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Abel Torres-EspínWeill Institute for Neurosciences, Brain and Spinal Injury Center, Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-9787-8738
Carlos A AlmeidaWeill Institute for Neurosciences, Brain and Spinal Injury Center, Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-9997-8719
Austin ChouWeill Institute for Neurosciences, Brain and Spinal Injury Center, Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-4328-5811
J Russell HuieWeill Institute for Neurosciences, Brain and Spinal Injury Center, Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-5594-4277
Michael ChiuDepartment of Neuroscience, University of California, San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-8879-7469
Romana VavrekFaculty of Rehabilitation Medicine and the Neuroscience and Mental Health Institute, University of Alberta, Edmonton, AB, Canada.ORCID http://orcid.org/0000-0003-1966-1258
Jeff SacramentoWeill Institute for Neurosciences, Brain and Spinal Injury Center, Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-7118-3519
Michael B OrrSpinal Cord and Brain Injury Research Center, Department of Physiology, University of Kentucky College of Medicine, Lexington, KY, USA.
John C GenselSpinal Cord and Brain Injury Research Center, Department of Physiology, University of Kentucky College of Medicine, Lexington, KY, USA.ORCID http://orcid.org/0000-0001-8980-108X
Jeffery S GretheDepartment of Neuroscience, University of California, San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-5212-7052
Maryann E MartoneDepartment of Neuroscience, University of California, San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-8406-3871
Karim FouadFaculty of Rehabilitation Medicine and the Neuroscience and Mental Health Institute, University of Alberta, Edmonton, AB, Canada. kfouad@ualberta.ca.ORCID http://orcid.org/0000-0003-3654-7852
Adam R FergusonWeill Institute for Neurosciences, Brain and Spinal Injury Center, Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA. adam.ferguson@ucsf.edu.ORCID http://orcid.org/0000-0001-7102-1608
STREET-FAIR Workshop Participants

Funding

Resource DiscoveryP41EB019936 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI David Nelson Kennedy · 2016 to 2026
$15.2M
Large-scale meta-analysis of functional MRI dataR01MH096906 · NIMH · UNIVERSITY OF TEXAS AT AUSTIN · PI Alejandro De La Vega · 2012 to 2026
$7.9M
Exposing the Deep Content of the Publication: Knowledge Extraction for Neuroimaging in Child PsychiatryR01MH083320 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FRAZIER, JEAN A, KENNEDY, DAVID NELSON · 2009 to 2020
$6.3M
Maladaptive Plasticity in Spinal Cord Injury: Cellular MechanismsR01NS122888 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERGUSON, ADAM R · 2021 to 2025
$3.0M
Maladaptive Plasticity in Spinal Cord Injury: Cellular MechanismsR01NS088475 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERGUSON, ADAM R · 2015 to 2019
$1.7M
Translational Outcomes Project: Visualizing Syndromic Information and Outcomes for Neurotrauma (TOP-VISION)UH3NS106899 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BEATTIE, MICHAEL S, BRESNAHAN, JACQUELINE C · 2020 to 2022
$1.2M
The Neuroimaging Data Model: FAIR descriptors of Brain Initiative Imaging ExperimentsRF1MH120021 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI KEATOR, DAVID BRYANT · 2019 to 2019
$944k
Translational Outcomes Project: Visualizing Syndromic Information and Outcomes for Neurotrauma (TOP-VISION)UG3NS106899 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BEATTIE, MICHAEL S, BRESNAHAN, JACQUELINE C · 2018 to 2019
$480k
Leveraging data-science for discovery in chronic TBII01RX002787 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI FERGUSON, ADAM R · 2018 to 2025
–
SCI Consortium Study: Harnessing big-data for plasticity and rehabilitation in translational SCII01RX002245 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI ADAM R FERGUSON · 2017 to 2026
–
NIBIB NIH HHS P41 EB019936NIMH NIH HHS R01 MH083320NIMH NIH HHS R01 MH096906NIMH NIH HHS RF1 MH120021NINDS NIH HHS R01 NS088475NINDS NIH HHS R01 NS122888NINDS NIH HHS UG3 NS106899NINDS NIH HHS UH3 NS106899RRD VA I01 RX002245RRD VA I01 RX002787
6 · The paper itself

Abstract

The past decade has seen accelerating movement from data protectionism in publishing toward open data sharing to improve reproducibility and translation of biomedical research. Developing data sharing infrastructures to meet these new demands remains a challenge. One model for data sharing involves simply attaching data, irrespective of its type, to publisher websites or general use repositories. However, some argue this creates a 'data dump' that does not promote the goals of making data Findable, Accessible, Interoperable and Reusable (FAIR). Specialized data sharing communities offer an alternative model where data are curated by domain experts to make it both open and FAIR. We report on our experiences developing one such data-sharing ecosystem focusing on 'long-tail' preclinical data, the Open Data Commons for Spinal Cord Injury (odc-sci.org). ODC-SCI was developed with community-based agile design requirements directly pulled from a series of workshops with multiple stakeholders (researchers, consumers, non-profit funders, governmental agencies, journals, and industry members). ODC-SCI focuses on heterogeneous tabular data collected by preclinical researchers including bio-behaviour, histopathology findings and molecular endpoints. This has led to an example of a specialized neurocommons that is well-embraced by the community it aims to serve. In the present paper, we provide a review of the community-based design template and describe the adoption by the community including a high-level review of current data assets, publicly released datasets, and web analytics. Although odc-sci.org is in its late beta stage of development, it represents a successful example of a specialized data commons that may serve as a model for other fields.

Indexed as

Biomedical ResearchSpinal Cord InjuriesEcosystemHumansInformation DisseminationReproducibility of Resultscommunity repositorydata reuseData sharingFAIRneurotraumaspinal cord injury

Identifiers

PMID34347243
PMCPMC9537193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.