Evidence map›Paper›PMID 34346753›Full record

ArticleMicrobiology spectrum2021

Transformations, Lineage Comparisons, and Analysis of Down-to-Up Protomer States of Variants of the SARS-CoV-2 Prefusion Spike Protein, Including the UK Variant B.1.1.7.

Michael H Peters, Oscar Bastidas, Daniel S Kokron, Christopher E Henze

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Michael H PetersDepartment of Chemical and Life Science Engineering, Virginia Commonwealth University, Richmond, Virginia, USA.ORCID 0000-0002-9612-1055
Oscar BastidasCollege of Biological Sciences, University of Minnesota, Minneapolis, Minnesota, USA.
Daniel S KokronNASA Ames Research Center, Moffett Field, California, USA.
Christopher E HenzeNASA Ames Research Center, Moffett Field, California, USA.
Ames Research Center · USUniversity of Minnesota · USVirginia Commonwealth University · US

Funding

Training Research Educators in Minnesota (TREM) whilst increasing diversityK12GM119955 · NIGMS · UNIVERSITY OF MINNESOTA · PI David Irwin Greenstein, Julia Willett · 2017 to 2026
$6.5M
COVID19 HPC ConsortiumNIGMS NIH HHS K12 GM119955NIH Academic Career Development Award K12GM119955Virginia Commonwealth University (VCU)
6 · The paper itself

Abstract

Monitoring and strategic response to variants in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) represent a considerable challenge in the current pandemic and for future viral outbreaks. Mutations/deletions of the virion's prefusion Spike protein may have significant impact on vaccines and therapeutics that utilize this key structural protein in their mitigation strategies. In this study, we have demonstrated how dominant energetic landscape mappings ("glue points") based on

Indexed as

Base SequenceCOVID-19HumansMolecular Dynamics SimulationMutationPhylogenyProtein BindingProtein ConformationProtein SubunitsSARS-CoV-2Sequence AlignmentSpike Glycoprotein, CoronavirusUnited KingdomProtein SubunitsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2betacoronavirusesCOVID-19prefusionSARS-CoV-2Spike proteinvariants

Identifiers

PMID34346753
PMCPMC8562339
OpenAlexW3188611887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.