Evidence map›Paper›PMID 34346542›Full record

ArticlePlant biotechnology journal2021

Pangenome of white lupin provides insights into the diversity of the species.

Bárbara Hufnagel, Alexandre Soriano, Jemma Taylor, Fanchon Divol, Magdalena Kroc, Heather Sanders, Likawent Yeheyis, Matthew Nelson, Benjamin Péret

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  11. The white lupin CCR1 receptor-like kinase controls systemic Autoregulation of Cluster Root and Nodule Development.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Bárbara HufnagelBPMP, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France.ORCID 0000-0002-3515-2122
Alexandre SorianoBPMP, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France.
Jemma TaylorRoyal Botanic Gardens, Kew, UK.
Fanchon DivolBPMP, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France.
Magdalena KrocInstitute of Plant Genetics Polish Academy of Sciences, Poznan, Poland.
Heather SandersSecure Harvests, Bradford on Avon, UK.
Likawent YeheyisAmhara Agricultural Research Institute, Bahir Dar, Ethiopia.
Matthew NelsonRoyal Botanic Gardens, Kew, UK.
Benjamin PéretBPMP, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France.ORCID 0000-0003-1336-0796

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White lupin is an old crop with renewed interest due to its seed high protein content and high nutritional value. Despite a long domestication history in the Mediterranean basin, modern breeding efforts have been fairly scarce. Recent sequencing of its genome has provided tools for further description of genetic resources but detailed characterization of genomic diversity is still missing. Here, we report the genome sequencing of 39 accessions that were used to establish a white lupin pangenome. We defined 32 068 core genes that are present in all individuals and 14 822 that are absent in some and may represent a gene pool for breeding for improved productivity, grain quality, and stress adaptation. We used this new pangenome resource to identify candidate genes for alkaloid synthesis, a key grain quality trait. The white lupin pangenome provides a novel genetic resource to better understand how domestication has shaped the genomic variability within this crop. Thus, this pangenome resource is an important step towards the effective and efficient genetic improvement of white lupin to help meet the rapidly growing demand for plant protein sources for human and animal consumption.

Indexed as

Genome, PlantLupinusChromosome MappingDomesticationPlant Breedingdomesticationpangenomeplant diversitywhite lupin

Identifiers

PMID34346542
PMCPMC8633493

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.