Evidence map›Paper›PMID 34345007›Full record

ArticleCommunications biology2021

Identification, mapping and relative quantitation of SARS-CoV-2 Spike glycopeptides by Mass-Retention Time Fingerprinting.

Rod Chalk, William E P Greenland, Tiago Moreira, Jesse Coker, Shubhashish M M Mukhopadhyay, Eleanor Williams, Charlotte Manning, Tina Bohstedt, Rama McCrorie, Alejandra Fernandez-Cid and 1 more

Abstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Measuring change in glycoprotein structure.Current opinion in structural biology · 2022
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Rod ChalkCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK. rod.chalk@cmd.ox.ac.uk.ORCID 0000-0002-9942-2339
William E P GreenlandAgilent Technologies, Lakeside, Cheadle Royal Business Park, Cheadle, Cheshire, UK.
Tiago MoreiraCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.
Jesse CokerCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.
Shubhashish M M MukhopadhyayCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.
Eleanor WilliamsCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.ORCID 0000-0002-1331-9518
Charlotte ManningCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.
Tina BohstedtCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.
Rama McCrorieCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.
Alejandra Fernandez-CidCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.
Nicola A Burgess-BrownCentre for Medicines Discovery, ORCRB, University of Oxford, Oxford, UK.

Funding

Wellcome Trust
6 · The paper itself

Abstract

We describe an analytical method for the identification, mapping and relative quantitation of glycopeptides from SARS-CoV-2 Spike protein. The method may be executed using a LC-TOF mass spectrometer, requires no specialized knowledge of glycan analysis and exploits the differential resolving power of reverse phase HPLC. While this separation technique resolves peptides with high efficiency, glycans are resolved poorly, if at all. Consequently, glycopeptides consisting of the same peptide bearing different glycan structures will all possess very similar retention times and co-elute. Rather than a disadvantage, we show that shared retention time can be used to map multiple glycan species to the same peptide and location. In combination with MSMS and pseudo MS3, we have constructed a detailed mass-retention time database for Spike glycopeptides. This database allows any accurate mass LC-MS laboratory to reliably identify and quantify Spike glycopeptides from a single overnight elastase digest in less than 90 minutes.

Indexed as

Databases, ProteinGlycopeptidesMass SpectrometrySpike Glycoprotein, CoronavirusTime FactorsGlycopeptidesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID34345007
PMCPMC8333269

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.