Evidence map›Paper›PMID 34344973›Full record

ArticleScientific reports2021

Transcriptome profile of goat folliculogenesis reveals the interaction of oocyte and granulosa cell in correlation with different fertility population.

Shen Li, Junjie Wang, Hongfu Zhang, Dongxue Ma, Minghui Zhao, Na Li, Yuhao Men, Yuan Zhang, Huimin Chu, Chuzhao Lei and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Shen Li *College of Animal Sciences and Technology, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China.
Junjie Wang *College of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China.
Hongfu ZhangState Key Laboratory of Animal Nutrition, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, People's Republic of China.
Dongxue MaCollege of Animal Sciences and Technology, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China.
Minghui ZhaoCollege of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China.
Na LiCollege of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China.
Yuhao MenCollege of Animal Sciences and Technology, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China.
Yuan ZhangJining Animal Husbandry Development Center, Jining, People's Republic of China.
Huimin ChuJining Agricultural Science Institute, Jining, People's Republic of China.
Chuzhao LeiKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, 712100, People's Republic of China.
Wei ShenCollege of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China.
Othman El-Mahdy OthmanCell Biology Department, National Research Centre, Dokki, Giza, 12311, Egypt.
Yong ZhaoCollege of Life Sciences, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China. yzhao818@hotmail.com.
Lingjiang MinCollege of Animal Sciences and Technology, Qingdao Agricultural University, Qingdao, 266109, People's Republic of China. mlj020963@hotmail.com.
Qingdao Agricultural University · CNChinese Academy of Agricultural Sciences · CNInstitute of Animal Sciences · CNNational Research Centre · EGNorthwest A&F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To understand the molecular and genetic mechanisms related to the litter size in one species of two different populations (high litter size and low litter size), we performed RNA-seq for the oocytes and granulosa cells (GCs) at different developmental stages of follicle, and identified the interaction of genes from both sides of follicle (oocyte and GCs) and the ligand-receptor pairs from these two sides. Our data were very comprehensive to uncover the difference between these two populations regarding the folliculogenesis. First, we identified a set of potential genes in oocyte and GCs as the marker genes which can be used to determine the goat fertility capability and ovarian reserve ability. The data showed that GRHPR, GPR84, CYB5A and ERAL1 were highly expressed in oocyte while JUNB, SCN2A, MEGE8, ZEB2, EGR1and PRRC2A were highly expressed in GCs. We found more functional genes were expressed in oocytes and GCs in high fertility group (HL) than that in low fertility group (LL). We uncovered that ligand-receptor pairs in Notch signaling pathway and transforming growth factor-β (TGF-β) superfamily pathways played important roles in goat folliculogenesis for the different fertility population. Moreover, we discovered that the correlations of the gene expression in oocytes and GCs at different stages in the two populations HL and LL were different, too. All the data reflected the gene expression landscape in oocytes and GCs which was correlated well with the fertility capability.

Indexed as

TranscriptomeAnimalsBiomarkersCell CommunicationComputational BiologyFemaleFertilityGene Expression ProfilingGene Expression Regulation, DevelopmentalGoatsGranulosa CellsOocytesOogenesisOvarian FollicleBiomarkers

Identifiers

PMID34344973
PMCPMC8333342
OpenAlexW3191424798

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.