Evidence map›Paper›PMID 34343197›Full record

ArticlePLoS neglected tropical diseases2021

Genetic source tracking of human plague cases in Inner Mongolia-Beijing, 2019.

Jianyun Li, Yumeng Wang, Fang Liu, Xiaona Shen, Yiting Wang, Mengguang Fan, Yao Peng, Shuyi Wang, Yilan Feng, Wen Zhang and 11 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in PLoS neglected tropical diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  5. Review
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  8. Influence of biotic and abiotic factors on flea species population dynamics onInternational journal for parasitology. Parasites and wildlife · 2023
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  11. mStrain: strain-level identification ofBioinformatics advances · 2023
    Article
  12. Article
  13. Zoonoses (Shannon, Ireland) · 2023
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 1 country.

Jianyun LiGeneral Center for Disease Control and Prevention of Inner Mongolia Autonomous Region, Huhehot, China.
Yumeng WangNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Fang LiuGeneral Center for Disease Control and Prevention of Inner Mongolia Autonomous Region, Huhehot, China.
Xiaona ShenNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Yiting WangNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Mengguang FanGeneral Center for Disease Control and Prevention of Inner Mongolia Autonomous Region, Huhehot, China.
Yao PengNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Shuyi WangGeneral Center for Disease Control and Prevention of Inner Mongolia Autonomous Region, Huhehot, China.
Yilan FengGeneral Center for Disease Control and Prevention of Inner Mongolia Autonomous Region, Huhehot, China.
Wen ZhangNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Yanning LvBeijing Center for Disease Control and Prevention, Beijing, China.
Huijuan ZhangNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Xin LuNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Enmin ZhangNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Jianchun WeiNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Lijuan ChenBeijing Center for Disease Control and Prevention, Beijing, China.
Biao KanNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.
Zhongbing ZhangGeneral Center for Disease Control and Prevention of Inner Mongolia Autonomous Region, Huhehot, China.
Jianguo XuNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.ORCID 0000-0003-3649-8229
Wenrui WangGeneral Center for Disease Control and Prevention of Inner Mongolia Autonomous Region, Huhehot, China.
Wei LiNational Institute for Communicable Disease Control and Prevention (ICDC), China CDC, Changping, Beijing, China.ORCID 0000-0002-3257-1540
Chinese Center For Disease Control and Prevention · CNInner Mongolia Comprehensive Disease Prevention and Control Center · CNBeijing Center for Disease Prevention and Control · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

On 12 November 2019, one couple from the Sonid Left Qi (County) in the Inner Mongolia Autonomous Region was diagnosed with pneumonic plague in Beijing. The wife acquired the infection from her husband. Thereafter, two bubonic plague cases were identified in Inner Mongolia on November 16th and 24th. In this study, genome-wide single nucleotide polymorphism (SNP) analysis was used to identify the phylogenetic relationship of Yersinia pestis strains isolated in Inner Mongolia. Strains isolated from reservoirs in 2018 and 2019 in Inner Mongolia, together with the strain isolated from Patient C, were further clustered into 2.MED3m, and two novel lineages (2.MED3q, 2.MED3r) in the 2.MED3 population. According to the analysis of PCR-based molecular subtyping methods, such as the MLVA 14 scheme and seven SNP allele sequencing, Patients A/B and D were classified as 2.MED3m. In addition, strains from rodents living near the patients' residences were clustered into the same lineage as patients. Such observations indicated that human plague cases originated from local reservoirs. Corresponding phylogenetic analysis also indicated that rodent plague strains in different areas in Inner Mongolia belong to different epizootics rather than being caused by spreading from the same epizootic in Meriones unguiculatus in 2019.

Indexed as

AdultAnimalsBeijingChinaFatal OutcomeFemaleHumansMaleMiddle AgedPhylogenyPlagueRodentiaYersinia pestis

Identifiers

PMID34343197
PMCPMC8362994
OpenAlexW3190541659

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.