Evidence map›Paper›PMID 34342533›Full record

ArticlemSystems2021

Chemical Gradients of Plant Substrates in an

Andrés Mauricio Caraballo-Rodríguez, Sara P Puckett, Kathleen E Kyle, Daniel Petras, Ricardo da Silva, Louis-Félix Nothias, Madeleine Ernst, Justin J J van der Hooft, Anupriya Tripathi, Mingxun Wang and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Andrés Mauricio Caraballo-RodríguezCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, USA.
Sara P PuckettDivision of Medicinal Chemistry, Department of Pharmaceutical Sciences, University of Connecticutgrid.63054.34, Storrs, Connecticut, USA.
Kathleen E KyleDepartment of Molecular and Cell Biology, University of Connecticutgrid.63054.34, Storrs, Connecticut, USA.
Daniel PetrasCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, USA.
Ricardo da SilvaSchool of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, SP, Brazil.
Louis-Félix NothiasCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, USA.
Madeleine ErnstSection for Clinical Mass Spectrometry, Danish Center for Neonatal Screening, Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark.
Justin J J van der HooftBioinformatics Group, Wageningen University, Wageningen, the Netherlands.
Anupriya TripathiCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, USA.
Mingxun WangCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, USA.
Marcy J BalunasDivision of Medicinal Chemistry, Department of Pharmaceutical Sciences, University of Connecticutgrid.63054.34, Storrs, Connecticut, USA.
Jonathan L KlassenDepartment of Molecular and Cell Biology, University of Connecticutgrid.63054.34, Storrs, Connecticut, USA.
Pieter C DorresteinCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, USA.

Funding

TrainingP41GM103484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PEVZNER, PAVEL A · 2012 to 2018
$8.7M
Unified Computation Tools for Natural Products ResearchR01GM107550 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COTTRELL, GARRISON W, GERWICK, WILLIAM HENRY · 2013 to 2025
$8.2M
Discovering novel small molecule antibiotics from complex microbial communities by integrating computational mass spectrometry and metagenome miningDP2GM137413 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI MOHIMANI, HOSEIN · 2019 to 2019
$2.2M
Reuse of Public Metabolomics DataR03CA211211 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DORRESTEIN, PIETER C · 2016 to 2016
$155k
Deutsche Forschungsgemeinschaft (DFG) PE 2600/1Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) 2017/18922-2Gordon and Betty Moore Foundation (GBMF) GBMF7622HHS | National Institutes of Health (NIH) 1DP2GM137413-01National Science Foundation (NSF) IOS-1656475National Science Foundation (NSF) IOS-1656481NCI NIH HHS R03 CA211211Netherlands eScience Center (NLeSC) ASDI.2017.030NIGMS NIH HHS DP2 GM137413NIGMS NIH HHS P41 GM103484NIGMS NIH HHS R01 GM107550
6 · The paper itself

Abstract

Many ant species grow fungus gardens that predigest food as an essential step of the ants' nutrient uptake. These symbiotic fungus gardens have long been studied and feature a gradient of increasing substrate degradation from top to bottom. To further facilitate the study of fungus gardens and enable the understanding of the predigestion process in more detail than currently known, we applied recent mass spectrometry-based approaches and generated a three-dimensional (3D) molecular map of an

Indexed as

ant fungus gardenAtta texanachemical transformationfungal symbiontmass spectrometrymetabolomicsmolecular cartography

Identifiers

PMID34342533
PMCPMC8409729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.