Evidence map›Paper›PMID 34342274›Full record

ArticleActa crystallographica. Section D, Structural biology2021

Structural and spectrophotometric investigation of two unnatural amino-acid altered chromophores in the superfolder green fluorescent protein.

Gregory M Olenginski, Juliana Piacentini, Darcy R Harris, Nicolette A Runko, Brianna M Papoutsis, Jordan R Alter, Kenneth R Hess, Scott H Brewer, Christine M Phillips-Piro

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Gregory M OlenginskiDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.
Juliana PiacentiniDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.ORCID 0000-0002-2604-0428
Darcy R HarrisDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.
Nicolette A RunkoDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.
Brianna M PapoutsisDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.
Jordan R AlterDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.
Kenneth R HessDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.
Scott H BrewerDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.
Christine M Phillips-PiroDepartment of Chemistry, Franklin & Marshall College, PO Box 3003, Lancaster, PA 17604-3003, USA.ORCID 0000-0002-7335-7487
Franklin & Marshall College · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Monitoring and Tuning a Gas-Binding Heme Protein with Unnatural Amino AcidsR15GM121984 · NIGMS · FRANKLIN AND MARSHALL COLLEGE · PI PIRO, CHRISTINE MARIE PHILLIPS · 2016 to 2016
$372k
Camille and Henry Dreyfus Foundation TH-15-009National Institutes of Health, National Institute of General Medical Sciences R15GM121984NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R15 GM121984
6 · The paper itself

Abstract

The spectrophotometric properties of the green fluorescent protein (GFP) result from the post-translationally cyclized chromophore composed of three amino acids including a tyrosine at the center of the β-barrel protein. Altering the amino acids in the chromophore or the nearby region has resulted in numerous GFP variants with differing photophysical properties. To further examine the effect of small atomic changes in the chromophore on the structure and photophysical properties of GFP, the hydroxyl group of the chromophore tyrosine was replaced with a nitro or a cyano group. The structures and spectrophotometric properties of these superfolder GFP (sfGFP) variants with the unnatural amino acids (UAAs) 4-nitro-L-phenylalanine or 4-cyano-L-phenylalanine were explored. Notably, the characteristic 487 nm absorbance band of wild-type (wt) sfGFP is absent in both unnatural amino-acid-containing protein constructs (Tyr66pNO

Indexed as

Amino AcidsCrystallography, X-RayGreen Fluorescent ProteinsSpectrophotometryAmino AcidsGreen Fluorescent Proteins4-cyano-l-phenylalanine4-nitro-l-phenylalanineoptical spectroscopysuperfolder green fluorescent proteinunnatural amino acidsX-ray crystallography

Identifiers

PMID34342274
PMCPMC8329867
OpenAlexW3187587480

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.