Evidence map›Paper›PMID 34341563›Full record

ArticleNature genetics2021

Activation of γ-globin gene expression by GATA1 and NF-Y in hereditary persistence of fetal hemoglobin.

Phillip A Doerfler, Ruopeng Feng, Yichao Li, Lance E Palmer, Shaina N Porter, Henry W Bell, Merlin Crossley, Shondra M Pruett-Miller, Yong Cheng, Mitchell J Weiss

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. New Gene Therapy Strategy for β-Thalassemia.Stem cell reviews and reports · 2026
    Review
  6. Article
  7. Molecular and therapeutic frontiers in anemia therapy.The Journal of clinical investigation · 2026
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Mechanisms of Globin Gene Regulation in Mammals.Annual review of genetics · 2025
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. The role(s) of NF-Y in development and differentiation.Cell death and differentiation · 2025
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Phillip A DoerflerDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0001-7566-9073
Ruopeng FengDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Yichao LiDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0001-5791-096X
Lance E PalmerDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-2519-8602
Shaina N PorterDepartment of Cell & Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Henry W BellSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0003-4677-8208
Merlin CrossleySchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0003-2057-3642
Shondra M Pruett-MillerDepartment of Cell & Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-3793-585X
Yong ChengDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-9314-0971
Mitchell J WeissDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA. mitch.weiss@stjude.org.ORCID http://orcid.org/0000-0003-2460-3036
St. Jude Children's Research Hospital · USUNSW Sydney · AU

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
VIROSOME/PROTEOLIPOSOME MEDIATED GENE TRANSFERP01HL053749 · NHLBI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEISS, MITCHELL J · 1994 to 2022
$43.6M
PedGeneRx - Admin Supplement to Base Editing and Prime Editing for Sickle Cell Disease R01R01HL156647 · NHLBI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Agnieszka Czechowicz, DAVID R LIU · 2021 to 2026
$4.8M
Identification of causal non-coding variants in childhood genetic disordersR35GM133614 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHENG, YONG · 2019 to 2023
$2.2M
Mapping Gamma Globin Regulatory ElementsF32DK118822 · NIDDK · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DOERFLER, PHILLIP A · 2018 to 2020
$192k
NCI NIH HHS P30 CA021765NHLBI NIH HHS P01 HL053749NHLBI NIH HHS R01 HL156647NIDDK NIH HHS F32 DK118822NIGMS NIH HHS R35 GM133614
6 · The paper itself

Abstract

Hereditary persistence of fetal hemoglobin (HPFH) ameliorates β-hemoglobinopathies by inhibiting the developmental switch from γ-globin (HBG1/HBG2) to β-globin (HBB) gene expression. Some forms of HPFH are associated with γ-globin promoter variants that either disrupt binding motifs for transcriptional repressors or create new motifs for transcriptional activators. How these variants sustain γ-globin gene expression postnatally remains undefined. We mapped γ-globin promoter sequences functionally in erythroid cells harboring different HPFH variants. Those that disrupt a BCL11A repressor binding element induce γ-globin expression by facilitating the recruitment of nuclear transcription factor Y (NF-Y) to a nearby proximal CCAAT box and GATA1 to an upstream motif. The proximal CCAAT element becomes dispensable for HPFH variants that generate new binding motifs for activators NF-Y or KLF1, but GATA1 recruitment remains essential. Our findings define distinct mechanisms through which transcription factors and their cis-regulatory elements activate γ-globin expression in different forms of HPFH, some of which are being recreated by therapeutic genome editing.

Indexed as

AnimalsBinding SitesCCAAT-Binding FactorCell LineChlorocebus aethiopsCOS CellsCRISPR-Cas SystemsErythroid CellsFetal Hemoglobingamma-GlobinsGATA1 Transcription FactorGene EditingGene Expression Regulation, DevelopmentalHumansPromoter Regions, GeneticRepressor ProteinsBCL11A protein, humanCCAAT-Binding FactorFetal Hemoglobingamma-GlobinsGATA1 protein, humanGATA1 Transcription FactorRepressor Proteins

Identifiers

PMID34341563
PMCPMC8610173
OpenAlexW3192398634

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.