Evidence map›Paper›PMID 34341533›Full record

ArticleNature cell biology2021

LKB1 inactivation modulates chromatin accessibility to drive metastatic progression.

Sarah E Pierce, Jeffrey M Granja, M Ryan Corces, Jennifer J Brady, Min K Tsai, Aubrey B Pierce, Rui Tang, Pauline Chu, David M Feldser, Howard Y Chang and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 58 citations in OpenAlex.

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  19. SOX17 expression in ovarian clear cell carcinoma.Journal of ovarian research · 2024
    Article
  20. Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Sarah E Pierce *Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA. pierces@stanford.edu.ORCID http://orcid.org/0000-0002-9145-9559
Jeffrey M Granja *Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
M Ryan CorcesCenter for Personal and Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.
Jennifer J BradyDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
Min K TsaiDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-4732-4259
Aubrey B PierceDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
Rui TangDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
Pauline ChuDepartment of Comparative Medicine, Stanford University School of Medicine, Stanford, CA, USA.
David M FeldserDepartment of Cancer Biology and Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-5975-864X
Howard Y ChangDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9459-4393
Michael C BassikDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-5185-8427
William J GreenleafDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA. wjg@stanford.edu.ORCID http://orcid.org/0000-0003-1409-3095
Monte M WinslowDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA. mwinslow@stanford.edu.ORCID http://orcid.org/0000-0002-5730-9573
Stanford University · USCancer Research Institute · USStanford Health Care · US

Funding

VACCINE INDUCED IMMUNITY IN THE YOUNG AND AGEDU19AI057266 · NIAID · EMORY UNIVERSITY · PI Rafi Ahmed · 2003 to 2026
$81.7M
Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Melinda L. Telli · 2007 to 2026
$71.4M
Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
PRODUCTION CENTER FOR MAPPING REGULATORY REGIONS OF THE HUMAN GENOMEUM1HG009442 · NHGRI · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2017 to 2021
$20.1M
Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Special EquipmentP50HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2014 to 2018
$15.2M
Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
LncRNA mechanisms in cancerR35CA209919 · NCI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2016 to 2022
$6.4M
High-throughput systematic characterization of regulatory element functionUM1HG009436 · NHGRI · STANFORD UNIVERSITY · PI BASSIK, MICHAEL C, GREENLEAF, WILLIAM JAMES · 2017 to 2021
$5.4M
Molecular dissection of Lkb1-mediated tumor suppressionR01CA230919 · NCI · STANFORD UNIVERSITY · PI WINSLOW, MONTE MEIER · 2018 to 2022
$2.1M
Molecular Dissection of an Arntl2 induced pro-metastatic secretomeR01CA204620 · NCI · STANFORD UNIVERSITY · PI WINSLOW, MONTE MEIER · 2016 to 2020
$1.8M
NCI NIH HHS P30 CA124435NCI NIH HHS R01 CA204620NCI NIH HHS R01 CA230919NCI NIH HHS R35 CA209919NCI NIH HHS T32 CA009302NHGRI NIH HHS P50 HG007735NHGRI NIH HHS RM1 HG007735NHGRI NIH HHS UM1 HG009436NHGRI NIH HHS UM1 HG009442NIAID NIH HHS U19 AI057266NIEHS NIH HHS P30 ES013508
6 · The paper itself

Abstract

Metastasis is the leading cause of cancer-related deaths and enables cancer cells to compromise organ function by expanding in secondary sites. Since primary tumours and metastases often share the same constellation of driver mutations, the mechanisms that drive their distinct phenotypes are unclear. Here we show that inactivation of the frequently mutated tumour suppressor gene LKB1 (encoding liver kinase B1) has evolving effects throughout the progression of lung cancer, which leads to the differential epigenetic re-programming of early-stage primary tumours compared with late-stage metastases. By integrating genome-scale CRISPR-Cas9 screening with bulk and single-cell multi-omic analyses, we unexpectedly identify LKB1 as a master regulator of chromatin accessibility in lung adenocarcinoma primary tumours. Using an in vivo model of metastatic progression, we further show that loss of LKB1 activates the early endoderm transcription factor SOX17 in metastases and a metastatic-like sub-population of cancer cells within primary tumours. The expression of SOX17 is necessary and sufficient to drive a second wave of epigenetic changes in LKB1-deficient cells that enhances metastatic ability. Overall, our study demonstrates how the downstream effects of an individual driver mutation can change throughout cancer development, with implications for stage-specific therapeutic resistance mechanisms and the gene regulatory underpinnings of metastatic evolution.

Indexed as

AdenocarcinomaAMP-Activated Protein KinasesAnimalsCell Line, TumorChromatinFemaleHMGB ProteinsHumansLung NeoplasmsMaleMiceMutationNeoplasm MetastasisProtein Serine-Threonine KinasesSOXF Transcription FactorsAMP-Activated Protein KinasesChromatinHMGB ProteinsProtein Serine-Threonine KinasesSox17 protein, mouseSOXF Transcription FactorsStk11 protein, mouse

Identifiers

PMID34341533
PMCPMC8355205
OpenAlexW3191116136

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.