Evidence map›Paper›PMID 34341363›Full record

ArticleScientific reports2021

An infrared spectral biomarker accurately predicts neurodegenerative disease class in the absence of overt symptoms.

Lila Lovergne, Dhruba Ghosh, Renaud Schuck, Aris A Polyzos, Andrew D Chen, Michael C Martin, Edward S Barnard, James B Brown, Cynthia T McMurray

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lila Lovergne *Division of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Dhruba Ghosh *Department of Statistics, University of California, Berkeley, CA, 94720, USA.
Renaud Schuck *Division of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Aris A Polyzos *Division of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Andrew D ChenDepartment of Statistics, University of California, Berkeley, CA, 94720, USA.
Michael C MartinAdvanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Edward S BarnardMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
James B BrownDepartment of Statistics, University of California, Berkeley, CA, 94720, USA.
Cynthia T McMurrayDivision of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. ctmcmurray@lbl.gov.
Lawrence Berkeley National Laboratory · USUniversity of California, Berkeley · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WALTER J. CHAZIN · 2001 to 2026
$89.6M
Chemical FingerprintingR01NS060115 · NINDS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI POLYZOS, ARIS A · 2007 to 2024
$7.7M
DNA Expansion and Mismatch RepairR01GM119161 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI MCMURRAY, CYNTHIA THERESE · 2017 to 2020
$3.1M
Predicting neurodegeneration in living patients by IR imaging of skin fibroblastsR21AG077458 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI POLYZOS, ARIS A · 2022 to 2022
$541k
Novel Spectral Biomarkers for Alzheimer's DiseaseR21AG070972 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI MCMURRAY, CYNTHIA THERESE · 2021 to 2022
$463k
NCI NIH HHS P01 CA092584NIA NIH HHS R21 AG070972NIA NIH HHS R21 AG077458NIGMS NIH HHS R01 GM119161NINDS NIH HHS R01 NS060115
6 · The paper itself

Abstract

Although some neurodegenerative diseases can be identified by behavioral characteristics relatively late in disease progression, we currently lack methods to predict who has developed disease before the onset of symptoms, when onset will occur, or the outcome of therapeutics. New biomarkers are needed. Here we describe spectral phenotyping, a new kind of biomarker that makes disease predictions based on chemical rather than biological endpoints in cells. Spectral phenotyping uses Fourier Transform Infrared (FTIR) spectromicroscopy to produce an absorbance signature as a rapid physiological indicator of disease state. FTIR spectromicroscopy has over the past been used in differential diagnoses of manifest disease. Here, we report that the unique FTIR chemical signature accurately predicts disease class in mouse with high probability in the absence of brain pathology. In human cells, the FTIR biomarker accurately predicts neurodegenerative disease class using fibroblasts as surrogate cells.

Indexed as

Spectroscopy, Fourier Transform InfraredAnimalsAnimals, NewbornAstrocytesBiomarkersCells, CulturedFibroblastsHumansLipidsMiceMice, Inbred C57BLNeurodegenerative DiseasesPhenotypeReproducibility of ResultsBiomarkersLipids

Identifiers

PMID34341363
PMCPMC8329289
OpenAlexW3192252861

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.