Evidence map›Paper›PMID 34340539›Full record

ArticlemBio2021

The dCache Chemoreceptor TlpA of Helicobacter pylori Binds Multiple Attractant and Antagonistic Ligands via Distinct Sites.

Kevin S Johnson, Bassam A Elgamoudi, Freda E-C Jen, Christopher J Day, Emily Goers Sweeney, Megan L Pryce, Karen Guillemin, Thomas Haselhorst, Victoria Korolik, Karen M Ottemann

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
  5. Review
  6. Article
  7. Bacterial sensor evolved by decreasing complexity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Identification of a dCache-type chemoreceptor inFrontiers in microbiology · 2024
    Article
  13. The importance of cache domains in αChannels (Austin, Tex.) · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Signal binding at both modules of its dCache domain enables the McpA chemoreceptor ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Amino acid sensor conserved from bacteria to humans.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Kevin S Johnson *Department of Microbiology and Environmental Toxicology, University of California, Santa Cruzgrid.205975.c, California, USA.
Bassam A Elgamoudi *Institute for Glycomics, Griffith Universitygrid.1022.1, Gold Coast Campus, Southport, QLD, Australia.
Freda E-C JenInstitute for Glycomics, Griffith Universitygrid.1022.1, Gold Coast Campus, Southport, QLD, Australia.
Christopher J DayInstitute for Glycomics, Griffith Universitygrid.1022.1, Gold Coast Campus, Southport, QLD, Australia.
Emily Goers SweeneyInstitute of Molecular Biology, University of Oregongrid.170202.6, Eugene, Oregon, USA.
Megan L PryceDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruzgrid.205975.c, California, USA.
Karen GuilleminInstitute of Molecular Biology, University of Oregongrid.170202.6, Eugene, Oregon, USA.
Thomas HaselhorstInstitute for Glycomics, Griffith Universitygrid.1022.1, Gold Coast Campus, Southport, QLD, Australia.
Victoria KorolikInstitute for Glycomics, Griffith Universitygrid.1022.1, Gold Coast Campus, Southport, QLD, Australia.
Karen M OttemannDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruzgrid.205975.c, California, USA.
Griffith University · AUUniversity of California, Santa Cruz · USUniversity of Oregon · US

Funding

The function of chemotactic signal transduction during colonization and diseaseR01AI116946 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI OTTEMANN, KAREN M · 2016 to 2025
$5.1M
NIAID NIH HHS R01 AI116946
6 · The paper itself

Abstract

The Helicobacter pylori chemoreceptor TlpA plays a role in dampening host inflammation during chronic stomach colonization. TlpA has a periplasmic dCache_1 domain, a structure that is capable of sensing many ligands; however, the only characterized TlpA signals are arginine, bicarbonate, and acid. To increase our understanding of TlpA's sensing profile, we screened for diverse TlpA ligands using ligand binding arrays. TlpA bound seven ligands with affinities in the low- to middle-micromolar ranges. Three of these ligands, arginine, fumarate, and cysteine, were TlpA-dependent chemoattractants, while the others elicited no response. Molecular docking experiments, site-directed point mutants, and competition surface plasmon resonance binding assays suggested that TlpA binds ligands via both the membrane-distal and -proximal dCache_1 binding pockets. Surprisingly, one of the nonactive ligands, glucosamine, acted as a chemotaxis antagonist, preventing the chemotaxis response to chemoattractant ligands, and acted to block the binding of ligands irrespective of whether they bound the membrane-distal or -proximal dCache_1 subdomains. In total, these results suggest that TlpA senses multiple attractant ligands as well as antagonist ones, an emerging theme in chemotaxis systems.

Indexed as

Bacterial ProteinsChemoreceptor CellsChemotaxisGlucosamineHelicobacter pyloriLigandsMolecular Docking SimulationPoint MutationBacterial ProteinsGlucosamineLigandschemoreceptorchemotaxisdCacheHelicobacter pyloriinflammationligand discoveryreceptor-ligand interactionsignal transduction

Identifiers

PMID34340539
PMCPMC8406319
OpenAlexW3190728602

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.