Evidence map›Paper›PMID 34339739›Full record

ArticleThe Journal of biological chemistry2021

Oxidative deamination of lysine residues by polyphenols generates an equilibrium of aldehyde and 2-piperidinol products.

Kosuke Yamaguchi, Masanori Itakura, Roma Kitazawa, Sei-Young Lim, Koji Nagata, Takahiro Shibata, Mitsugu Akagawa, Koji Uchida

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Kosuke YamaguchiGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Masanori ItakuraGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Roma KitazawaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Sei-Young LimGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Koji NagataGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Takahiro ShibataGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Mitsugu AkagawaGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, Japan.
Koji UchidaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan; Japan Agency for Medical Research and Development, CREST, Tokyo, Japan. Electronic address: a-uchida@g.ecc.u-tokyo.ac.jp.
The University of Tokyo · JPJapan Agency for Medical Research and Development · JPNagoya University · JPOsaka Prefecture University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyphenols, especially catechol-type polyphenols, exhibit lysyl oxidase-like activity and mediate oxidative deamination of lysine residues in proteins. Previous studies have shown that polyphenol-mediated oxidative deamination of lysine residues can be associated with altered electrical properties of proteins and increased crossreactivity with natural immunoglobulin M antibodies. This interaction suggested that oxidized proteins could act as innate antigens and elicit an innate immune response. However, the structural basis for oxidatively deaminated lysine residues remains unclear. In the present study, to establish the chemistry of lysine oxidation, we characterized oxidation products obtained via incubation of the lysine analog N-biotinyl-5-aminopentylamine with eggshell membranes containing lysyl oxidase and identified a unique six-membered ring 2-piperidinol derivative equilibrated with a ring-open product (aldehyde) as the major product. By monitoring these aldehyde-2-piperidinol products, we evaluated the lysyl oxidase-like activity of polyphenols. We also observed that this reaction was mediated by some polyphenols, especially o-diphenolic-type polyphenols, in the presence of copper ions. Interestingly, the natural immunoglobulin M monoclonal antibody recognized these aldehyde-2-piperidinol products as an innate epitope. These findings establish the existence of a dynamic equilibrium of oxidized lysine and provide important insights into the chemopreventive function of dietary polyphenols for chronic diseases.

Indexed as

AldehydesCyclizationDeaminationLysineOxidation-ReductionPiperidinesPolyphenolsProtein-Lysine 6-OxidaseAldehydesLysinePiperidinesPolyphenolsProtein-Lysine 6-Oxidaseinnate epitopeinnate immunitylysyl oxidationoxidation–reduction (redox)oxidative deamination of lysinepolyphenolpost-translational modification

Identifiers

PMID34339739
PMCPMC8387773
OpenAlexW3187172692

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.