Evidence map›Paper›PMID 34338933›Full record

ArticleAntonie van Leeuwenhoek2021

Transcript pattern analysis of Arf-family genes in the phytopathogen Fusarium oxysporum f. sp. lycopersici reveals the role of Arl3 in the virulence.

Carlos A Araiza-Cervantes, Marco I Valle-Maldonado, J Alberto Patiño-Medina, Viridiana Alejandre-Castañeda, Juan B Guzmán-Pérez, Martha I Ramírez-Díaz, Karla L Macias-Sánchez, Manuel S López-Berges, Víctor Meza-Carmen

Abstract read
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In one paragraph

Article in Antonie van Leeuwenhoek, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. The Ubiquitous Wilt-Inducing PathogenPathogens (Basel, Switzerland) · 2024
    Review
  2. The Adaptation ofJournal of fungi (Basel, Switzerland) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Carlos A Araiza-Cervantes *Laboratorio de Diferenciación Celular, Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, 58038, Morelia, Michoacán, Mexico.
Marco I Valle-Maldonado *Laboratorio de Diferenciación Celular, Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, 58038, Morelia, Michoacán, Mexico.
J Alberto Patiño-MedinaLaboratorio de Diferenciación Celular, Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, 58038, Morelia, Michoacán, Mexico.
Viridiana Alejandre-CastañedaLaboratorio de Diferenciación Celular, Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, 58038, Morelia, Michoacán, Mexico.
Juan B Guzmán-PérezLaboratorio de Diferenciación Celular, Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, 58038, Morelia, Michoacán, Mexico.
Martha I Ramírez-DíazLaboratorio de Diferenciación Celular, Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, 58038, Morelia, Michoacán, Mexico.
Karla L Macias-SánchezInstituto Politécnico Nacional, Unidad Profesional Interdisciplinaria de Ingeniería campus Guanajuato, 36275, Silao de la Victoria, Guanajuato, Mexico.
Manuel S López-BergesDepartamento de Genética, Facultad de Ciencias, Universidad de Córdoba, Campus de Excelencia Agroalimentario (ceiA3), Córdoba, 14071, Spain.
Víctor Meza-CarmenLaboratorio de Diferenciación Celular, Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, 58038, Morelia, Michoacán, Mexico. victor.meza@umich.mx.ORCID http://orcid.org/0000-0003-2838-7211
Universidad Michoacana de San Nicolás de Hidalgo · MXUniversidad de Guanajuato · MXUniversity of Córdoba · ES

Funding

Coordinación de la Investigación Científica 2.36Coordinación de la Investigación Científica 2.6
6 · The paper itself

Abstract

Fusarium oxysporum f. sp. lycopersici is an important plant pathogen that has been used to understand the virulence mechanisms that soil inhabiting fungi exhibit during the infection process. In F. oxysporum many of the virulence factors are secreted, and the secretion process requires the formation of vesicles. Arf family members, represented by Arf (ADP- Ribosylation Factor), Arl (Arf-like), and Sar (Secretion-associated and Ras-related) proteins, are involved in the vesicle creation process. In this study we identified the Arf family members in F. oxysporum f. sp. lycopersici, which includes seven putative proteins: Arf1, Arf3, Arl1 through Arl3, Arl8B, and Sar1. Quantification of the mRNA levels of each arf encoding gene revealed that the highest expression corresponds to arf1 in all tested conditions. The phylogenetic analysis revealed that no other Arf1 paralogue, such as Arf2 from yeast, is present in F. oxysporum f. sp. lycopersici. The essential function suggested of Arf1 in F. oxysporum f. sp. lycopersici was corroborated experimentally when, after several attempts, it was impossible to obtain a knockout mutant in arf1. Moreover, arl3 mRNA levels increased significantly when plant tissue was added as a sole carbon source, suggesting that the product of these genes could play pivotal roles during plant infection, the corresponding mutant ∆arl3 was less virulent compared to the wild-type strain. These results describe the role of arl3 as a critical regulator of the virulence in F. oxysporum f. sp. lycopersici and stablish a framework for the arf family members to be studied in deeper details in this phytopathogen.

Indexed as

FusariumSolanum lycopersicumPhylogenyPlant DiseasesVirulenceADP-ribosylation factorArf-like proteinsSmall G proteinsTomatoVirulence

Identifiers

PMID34338933
OpenAlexW3188040848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.