Evidence map›Paper›PMID 34338446›Full record

ArticleHLA2021

HLA genetic polymorphism in patients with Coronavirus Disease 2019 in Midwestern United States.

Emily Schindler, Marian Dribus, Brian F Duffy, Karl Hock, Christopher W Farnsworth, Loren Gragert, Chang Liu

Open access · bronzeAbstract read
In one paragraph

Article in HLA, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
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  10. The molecular mechanisms of CD8Frontiers in immunology · 2024
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Emily SchindlerDepartment of Laboratory Medicine, Mercy Hospital, St. Louis, Missouri, USA.
Marian DribusDepartment of Pathology & Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana, USA.
Brian F DuffyHLA Laboratory, Barnes-Jewish Hospital, St. Louis, Missouri, USA.
Karl HockDivision of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Christopher W FarnsworthDivision of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Loren GragertDepartment of Pathology & Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana, USA.ORCID 0000-0002-5945-6518
Chang LiuDivision of Laboratory and Genomic Medicine, Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.ORCID 0000-0001-6624-1454
Washington University in St. Louis · USTulane University · USBarnes-Jewish Hospital · USMercy Hospital · US

Funding

Rapid high-resolution typing of Human Leukocyte Antigen genes by nanopore sequencing for transplantationR41AI142919 · NIAID · NEWVENTUREIQ, LLC · PI LIU, CHANG · 2019 to 2019
$284k
NIAID NIH HHS R41 AI142919NIH HHS R41 AI142919-01Washington University School of Medicine Department of Pathology and Immunology
6 · The paper itself

Abstract

The experience of individuals with Coronavirus Disease 2019 (COVID-19) ranges from asymptomatic to life threatening multi-organ dysfunction. Specific HLA alleles may affect the predisposition to severe COVID-19 because of their role in presenting viral peptides to launch the adaptive immune response to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In this population-based case-control study in the midwestern United States, we performed high-resolution HLA typing of 234 cases hospitalized for COVID-19 in the St. Louis metropolitan area and compared their HLA allele frequencies with those of 22,000 matched controls from the National Marrow Donor Program (NMDP). We identified two predisposing alleles, HLA-DRB1*08:02 in the Hispanic group (OR = 9.0, 95% confidence interval: 2.2-37.9; adjusted p = 0.03) and HLA-A*30:02 in younger African Americans with ages below the median (OR = 2.2, 1.4-3.6; adjusted p = 0.01), and several candidate alleles with potential associations with COVID-19 in African American, White, and Hispanic groups. We also detected risk-associated amino acid residues in the peptide binding grooves of some of these alleles, suggesting the presence of functional associations. These findings support the notion that specific HLA alleles may be protective or predisposing factors to COVID-19. Future consortium analysis of pooled cases and controls is warranted to validate and extend these findings, and correlation with viral peptide binding studies will provide additional evidence for the functional association between HLA alleles and COVID-19.

Indexed as

COVID-19HLA-A AntigensHLA-DRB1 ChainsAllelesCase-Control StudiesGene FrequencyGenetic Predisposition to DiseaseHumansPolymorphism, GeneticSARS-CoV-2HLA-A AntigensHLA-DRB1 ChainsCOVID-19disease associationHLASARS-CoV-2

Identifiers

PMID34338446
PMCPMC8429120
OpenAlexW3191104213

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.