ArticleApplications in plant sciences2021
HybPhaser: A workflow for the detection and phasing of hybrids in target capture data sets.
Article in Applications in plant sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- Unravelling Complex Hybrid and Polyploid Evolutionary Relationships Using Phylogenetic Placement of Homologous Gene Copies from Target Enrichment Data.Systematic biology · 2026Article
- Murbeckiella is dead, long live Oreophyton: origin and systematics of tribe Oreophytoneae (Brassicaceae).Annals of botany · 2026Article
- Phasing Hyb-Seq loci from two combined bait sets to investigate phylogenetic patterns of hybridization within Boechera s.s. (Brassicaceae).Annals of botany · 2026Article
- Evidence of introgression amid phylogenetic conflict in Brachyotum, a plant radiation from the Tropical Andes.American journal of botany · 2026Article
- Origin of subgenomes in the circumboreal, allopolyploid, carnivorous plant Drosera anglica.American journal of botany · 2026Article
- Molecular identification and diversity assessment of Tyrrhenian Romulea species (Iridaceae).PloS one · 2026Article
- Resolving relationships in the radiation of Australia's largest pea clade (Fabaceae tribe Mirbelieae) with target-capture sequencing.Annals of botany · 2025Article
- Evaluating the utility of deep genome skimming for phylogenomic analyses: A case study in the species-rich genusPlant diversity · 2025Article
- Polyploidy linked with species richness but not diversification rates or niche breadth in Australian Pomaderreae (Rhamnaceae).Annals of botany · 2025Article
- Phylogenomics and classification of Cactaceae based on hundreds of nuclear genes.Plant systematics and evolution = Entwicklungsgeschichte und Systematik der Pflanzen · 2025Article
- Phylogenomic study ofFrontiers in plant science · 2025Article
- Complex but Clear Allopolyploid Pattern of Subtribe Tussilagininae (Asteraceae: Senecioneae) Revealed by Robust Phylogenomic Evidence, with Development of a Novel Homeolog-Sorting Pipeline.Systematic biology · 2024Article
- Artifactual Orthologs and the Need for Diligent Data Exploration in Complex Phylogenomic Datasets: A Museomic Case Study from the Andean Flora.Systematic biology · 2024Article
- Phylogenomic analysis reveals five independently evolved African forage grass clades in the genus Urochloa.Annals of botany · 2024Article
- Converging forms: an examination of sub-Arctic, circumarctic, and Central AsianFrontiers in plant science · 2024Article
- Phylogenomics of the pantropical Connaraceae: revised infrafamilial classification and the evolution of heterostyly.Plant systematics and evolution = Entwicklungsgeschichte und Systematik der Pflanzen · 2024Article
- Phylogenomics of Southern European Taxa in thePlants (Basel, Switzerland) · 2023Article
- Identifying Climatic Drivers of Hybridization with a New Ancestral Niche Reconstruction Method.Systematic biology · 2023Article
- Phylogenomic analyses of Sapindales support new family relationships, rapid Mid-Cretaceous Hothouse diversification, and heterogeneous histories of gene duplication.Frontiers in plant science · 2023Article
- Reticulate evolution in the Pteris fauriei group (Pteridaceae).Scientific reports · 2022Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premiseHybrids contain divergent alleles that can confound phylogenetic analyses but can provide insights into reticulated evolution when identified and phased. We developed a workflow to detect hybrids in target capture data sets and phase reads into parental lineages using a similarity and phylogenetic framework.
methodsWe used Angiosperms353 target capture data for
resultsAll known DISCUSSION: HybPhaser provides a novel approach to detect and phase hybrids in target capture data sets, which can provide insights into reticulations by revealing origins of hybrids and reduce conflicting signal, leading to more robust phylogenetic analyses.
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