Evidence map›Paper›PMID 34335862›Full record

ArticleComputational and mathematical methods in medicine2021

Comprehensive Characterization of Common and Cancer-Specific Differently Expressed lncRNAs in Urologic Cancers.

You-Ji Yan, Ling Zhang, Jia-Jie Zhou, Zhong-Jun Chen, Yi-Xiang Liao, Jin-Min Zeng, Hao Shen

Open access · hybridAbstract read
In one paragraph

Article in Computational and mathematical methods in medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. NInternational journal of oncology · 2023
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

You-Ji YanDepartment of Urology, Jingzhou Central Hospital, The Second Clinical College, Yangtze University, Jingzhou, Hubei 434020, China.ORCID https://orcid.org/0000-0002-1605-4762
Ling ZhangDepartment of Pathology, Wuhan No. 1 Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei Province 430022, China.ORCID https://orcid.org/0000-0002-9416-6671
Jia-Jie ZhouDepartment of Urology, Jingzhou Central Hospital, The Second Clinical College, Yangtze University, Jingzhou, Hubei 434020, China.ORCID https://orcid.org/0000-0003-1358-5039
Zhong-Jun ChenDepartment of Urology, Jingzhou Central Hospital, The Second Clinical College, Yangtze University, Jingzhou, Hubei 434020, China.ORCID https://orcid.org/0000-0002-1247-628X
Yi-Xiang LiaoDepartment of Urology, Jingzhou Central Hospital, The Second Clinical College, Yangtze University, Jingzhou, Hubei 434020, China.ORCID https://orcid.org/0000-0002-4313-9315
Jin-Min ZengDepartment of Urology, Jingzhou Central Hospital, The Second Clinical College, Yangtze University, Jingzhou, Hubei 434020, China.ORCID https://orcid.org/0000-0002-1434-773X
Hao ShenDepartment of Urology, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei Province 430014, China.ORCID https://orcid.org/0000-0002-8557-8973
Yangtze University · CNCentral Hospital of Wuhan · CNWuhan No.1 Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Urologic cancers, comprising prostate carcinoma (PCa), renal cell carcinoma (RCC), and bladder carcinoma (BCa), were the commonly occurred carcinoma amid males. Long noncoding RNAs (lncRNAs) with the length of more than 200 nt functioned importantly in physiological and pathological advancement. Nevertheless, further investigation regarding lncRNA expression feature and function in urologic cancers should be essential. This study is aimed at uncovering the roles of the differently expressed lncRNAs in urologic cancers. The data of gene expression levels was downloaded from lncRNAtor datasets. The lncRNA expression pattern existing in different urologic cancers was assessed by hierarchical clustering analysis. Gene Ontology (GO) analysis and KEGG pathway analysis were separately applied to evaluate the biological function and process and the biological pathways involving differently expressed lncRNAs. Our results indicated that 18 lncRNA expressions were increased, and 16 lncRNA expressions were reduced in urologic cancers after comparison with that in normal tissues. Moreover, our results demonstrated 61, 422, 137, and 281 lncRNAs were specifically dysregulated in bladder cancer (BLCA), kidney renal clear cell cancer (KIRC), kidney renal papillary cell cancer (KIRP), and prostate adenocarcinoma (PRAD), respectively. Bioinformatics analysis showed that differently expressed lncRNAs displayed crucially in urologic cancers. The prognostic value of common and cancer-specific differently expressed lncRNAs, such as PVT1, in cancer outcomes, was emphasized here. Our research has deeply unearthed the mechanism of differently expressed lncRNAs in urologic cancers development.

Indexed as

AdenocarcinomaCarcinoma, PapillaryCarcinoma, Renal CellComputational BiologyFemaleGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansKaplan-Meier EstimateKidney NeoplasmsMalePrognosisProstatic NeoplasmsRNA, Long NoncodingUrinary Bladder NeoplasmsUrologic NeoplasmsPVT1 long-non-coding RNA, humanRNA, Long Noncoding

Identifiers

PMID34335862
PMCPMC8286197
OpenAlexW3183037559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.