Evidence map›Paper›PMID 34335701›Full record

ArticleFrontiers in genetics2021

22q11.2 Low Copy Repeats Expanded in the Human Lineage.

Lisanne Vervoort, Nicolas Dierckxsens, Zjef Pereboom, Oronzo Capozzi, Mariano Rocchi, Tamim H Shaikh, Joris R Vermeesch

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus.International journal of molecular sciences · 2023
    Article
  10. Review
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Lisanne VervoortDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Nicolas DierckxsensDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Zjef PereboomCentre for Research and Conservation, Royal Zoological Society of Antwerp, Antwerp, Belgium.
Oronzo CapozziDepartment of Biology, University of Bari, Bari, Italy.
Mariano RocchiDepartment of Biology, University of Bari, Bari, Italy.
Tamim H ShaikhSection of Genetics and Metabolism, Department of Pediatrics, University of Colorado School of Medicine, Aurora, CO, United States.
Joris R VermeeschDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
KU Leuven · BEUniversity of Bari Aldo Moro · ITRoyal Zoological Society of Antwerp · BEUniversity of Colorado Denver · US

Funding

Next Generation Mapping of Complex Genomic Regions involved in Recurrent Structural VariationsR01GM120772 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KWOK, PUI-YAN, SHAIKH, TAMIM H · 2016 to 2019
$2.6M
NIGMS NIH HHS R01 GM120772
6 · The paper itself

Abstract

Segmental duplications or low copy repeats (LCRs) constitute duplicated regions interspersed in the human genome, currently neglected in standard analyses due to their extreme complexity. Recent functional studies have indicated the potential of genes within LCRs in synaptogenesis, neuronal migration, and neocortical expansion in the human lineage. One of the regions with the highest proportion of duplicated sequence is the 22q11.2 locus, carrying eight LCRs (LCR22-A until LCR22-H), and rearrangements between them cause the 22q11.2 deletion syndrome. The LCR22-A block was recently reported to be hypervariable in the human population. It remains unknown whether this variability also exists in non-human primates, since research is strongly hampered by the presence of sequence gaps in the human and non-human primate reference genomes. To chart the LCR22 haplotypes and the associated inter- and intra-species variability, we

Indexed as

22q11.2 deletion syndromechromosome 22 evolutionlow copy repeatssegmental duplicationstructural variation

Identifiers

PMID34335701
PMCPMC8320366
OpenAlexW3186845701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.