ArticleFrontiers in plant science2021
Chromosome Level Assembly of Homozygous Inbred Line 'Wongyo 3115' Facilitates the Construction of a High-Density Linkage Map and Identification of QTLs Associated With Fruit Firmness in Octoploid Strawberry (
Article in Frontiers in plant science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Rapid screening of genome edited strawberry (Fragaria ×ananassa) regenerants using high-resolution melting analysis followed by Amplicon sequencing.BMC research notes · 2026Article
- Genomic architecture of the resistance to Phytophthora cactorum 2 (RPc2) locus in strawberry (Fragaria × ananassa).The plant genome · 2026Article
- Genomic resources and genetic improvement of vital tropical and subtropical fruit crops: current status and prospects.AoB PLANTS · 2025Review
- Haplotype-resolved chromosome-level genome assembly of Fragaria × ananassa Duch. cv. 'Yuexin'.Scientific data · 2025Article
- Loss-of-function mutations in the fruit softening geneHorticulture research · 2025Article
- A telomere-to-telomere phased genome of an octoploid strawberry reveals a receptor kinase conferring anthracnose resistance.GigaScience · 2025Article
- A telomere-to-telomere haplotype-resolved genome of white-fruited strawberry reveals the complexity of fruit colour formation of cultivated strawberry.Plant biotechnology journal · 2025Article
- Global characterization of somatic mutations and DNA methylation changes during vegetative propagation in strawberries.Genome research · 2024Article
- A Dominance Hypothesis Argument for Historical Genetic Gains and the Fixation of Heterosis in Octoploid Strawberry.Genetics · 2024Article
- Study of Endogenous Viruses in the Strawberry Plants.Viruses · 2024Article
- Exploration of a European-centered strawberry diversity panel provides markers and candidate genes for the control of fruit quality traits.Horticulture research · 2024Article
- Genomic signatures of strawberry domestication and diversification.The Plant cell · 2024Article
- Advances in genomics and genome editing for improving strawberry (Frontiers in genetics · 2024Review
- Phased gap-free genome assembly of octoploid cultivated strawberry illustrates the genetic and epigenetic divergence among subgenomes.Horticulture research · 2024Article
- A medium-density genotyping platform for cultivated strawberry using DArTag technology.The plant genome · 2023Article
- Deciphering the genetic architecture of fruit color in strawberry.Journal of experimental botany · 2023Review
- High-quality haplotype-resolved genome assembly of cultivated octoploid strawberry.Horticulture research · 2023Article
- A multi-omics framework reveals strawberry flavor genes and their regulatory elements.The New phytologist · 2022Article
- Genomic and Bioinformatic Resources for Perennial Fruit Species.Current genomics · 2022Review
- A Chromosome-Level Genome Assembly of the Pygmy Mole Cricket Xya riparia.Genome biology and evolution · 2022Article
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12 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Strawberry is an allo-octoploid crop with high genome heterozygosity and complexity, which hinders the sequencing and the assembly of the genome. However, in the present study, we have generated a chromosome level assembly of octoploid strawberry sourced from a highly homozygous inbred line 'Wongyo 3115', using long- and short-read sequencing technologies. The assembly of 'Wongyo 3115' produced 805.6 Mb of the genome with 323 contigs scaffolded into 208 scaffolds with an N50 of 27.3 Mb after further gap filling. The whole genome annotation resulted in 151,892 genes with a gene density of 188.52 (genes/Mb) and validation of a genome, using BUSCO analysis resulted in 94.10% complete BUSCOs. Firmness is one of the vital traits in strawberry, which facilitate the postharvest shelf-life qualities. The molecular and genetic mechanisms that contribute the firmness in strawberry remain unclear. We have constructed a high-density genetic map based on the 'Wongyo 3115' reference genome to identify loci associated with firmness in the present study. For the quantitative trait locus (QTL) identification, the 'BS F
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