Evidence map›Paper›PMID 34333625›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2021

Application of natural language processing techniques to identify off-label drug usage from various online health communities.

Brian Dreyfus, Anuj Chaudhary, Parth Bhardwaj, V Karthikhaa Shree

Open access · hybridAbstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Brian DreyfusEpidemiology, Bristol Myers Squibb, Princeton, New Jersey, USA.ORCID 0000-0002-4241-9024
Anuj ChaudharyMu Sigma, Bengaluru, India.
Parth BhardwajMu Sigma, Bengaluru, India.
V Karthikhaa ShreeMu Sigma, Bengaluru, India.
Bristol-Myers Squibb (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveOutcomes mentioned on online health communities (OHCs) by patients can serve as a source of evidence for off-label drug usage evaluation, but identifying these outcomes manually is tedious work. We have built a natural language processing model to identify off-label usage of drugs mentioned in these patient posts. MATERIALS AND

methodsSingle patient posts from 4 major OHCs were considered for this study. A text classification model was built to classify the posts as either relevant or not relevant based on patient experience. The relevant posts were passed through a spelling correction tool, CSpell, and then medications and indications from these posts were identified using cTAKES (clinical Text Analysis and Knowledge Extraction System), a named entity recognition tool. Drug and indication pairs were identified using a dependency parser. Finally, if the paired indication was not mentioned on the label of the drug approved by U.S. Food and Drug Administration, it was tagged as off-label use of that drug.

resultsUsing this algorithm, we identified 289 off-label indications, achieving a recall of 76%.

conclusionsThe method designed in this study identifies and extracts the semantic relationship between drugs and indications from demotic posts in OHCs. The results demonstrate the feasibility of using natural language processing techniques in identifying off-label drug usage across online health forums for a variety of drugs. Understanding patients' off-label use of drugs may be able to help manufacturers innovate to better address patients' needs and assist doctors' prescribing decisions.

Indexed as

Off-Label UsePharmaceutical PreparationsDrug LabelingHumansNatural Language ProcessingSoftwarePharmaceutical Preparationsnatural language processing techniquesoff-labelOnline Health CommunitiesopenFDA application programming interface

Identifiers

PMID34333625
PMCPMC8449611
OpenAlexW3190523902

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.